PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011073448.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | CPP | ||||||||
Protein Properties | Length: 769aa MW: 84480.3 Da PI: 5.8749 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.5 | 4.1e-16 | 474 | 512 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C C dC+Nk XP_011073448.1 474 ACKRCNCKKSKCLKLYCECFAAGVYCVEPCACIDCFNKP 512 589**********************************96 PP | |||||||
2 | TCR | 51.1 | 2.6e-16 | 559 | 597 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN XP_011073448.1 559 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 597 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.8E-18 | 473 | 514 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.01 | 474 | 599 | IPR005172 | CRC domain |
Pfam | PF03638 | 6.8E-12 | 476 | 511 | IPR005172 | CRC domain |
SMART | SM01114 | 7.5E-18 | 559 | 600 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 7.5E-12 | 561 | 597 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 769 aa Download sequence Send to blast |
MREESSEEEM DVMDTPERVK NNQITASVSK FEDSPVFNFL NSLSPIQPVK SIHITQTINP 60 LSFASLPSVF TSPHVGSLRE SRIPRRHQLS DPSKPEFSSD NGSVIVDRNK GKMDTNKLDE 120 QEENLDPGAS NGQVAGEPSC EFAENFQYDR DSLKAKHVEE HACNSSTLVP LVEKTSLRQL 180 YGGEVNLEAV SQIDQHKEAA SCDWESLISD TSDLLNLESP NNTESFEKSV DPATTFYRSI 240 KNAMQNMHSI CPVVSGEQVG GRSEPENLLT QPGEGRESMD AESHDIIAGS SITDPSEKME 300 YEHLSGLYRG MRRRCLVFEM AGVRSKHLEE NSGSDSSVLP QFDGNTTANL QLVPTKRGND 360 SSCRVLPGIG LHLNALAATP KDYKIVNHEA SASGRLLIGP SSSSNFHHPT SDQELFSNIL 420 ADNLMEREID TVESVGLPVE DPCQKSGYMA NEEINQCSPK KKRRRLEQGG EAEACKRCNC 480 KKSKCLKLYC ECFAAGVYCV EPCACIDCFN KPVHEDTVLA TRKQIESRNP LAFAPKVIRA 540 SDSRPEVGED FSKTPASARH KRGCNCKKSG CLKKYCECYQ GGVGCSINCR CEGCKNAFGR 600 KDGSGVLGTD HELEEDELDT TERAVLDGDS QRTTTQSDFK QSMDSAPPAT PSRTGRQLVQ 660 PFSSKRKPPR SSSFPSISST SGFPASQPFG KSSFFPPPPK FDKHFDCVME DEVPEFLQGG 720 SPVGGIKSSS PNQKRVSPPQ RMETSPGLRS SRKLILRSIP SFPSLTTNQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 5e-18 | 478 | 596 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 5e-18 | 478 | 596 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 458 | 465 | PKKKRRRL |
2 | 459 | 464 | KKKRRR |
3 | 461 | 465 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011073448.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073448.1 | 0.0 | protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
TrEMBL | A0A2G9GVD9 | 0.0 | A0A2G9GVD9_9LAMI; Metallothionein-like protein | ||||
STRING | Migut.G00370.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2467 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 1e-136 | Tesmin/TSO1-like CXC domain-containing protein |