PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011073402.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | FAR1 | ||||||||
Protein Properties | Length: 671aa MW: 77460.5 Da PI: 8.5219 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 72.2 | 1.2e-22 | 65 | 148 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+e+GFsvr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w++ ++ leHnH l XP_011073402.1 65 NYYNCYAREAGFSVRVKNSWFKRNSREKYGAVLCCSSQGFKRVKDVN-----RLRKETRTGCPAMMRMRLVDSKRWRILEVTLEHNHLL 148 69****************************************99988.....99*********************************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.4E-20 | 65 | 148 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.0E-29 | 267 | 360 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.631 | 554 | 590 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-6 | 565 | 592 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 671 aa Download sequence Send to blast |
MEEIPLHTEQ TTDTLPCETP PGTNDGKAAF DDQNGNLEGN NSQGRKEFVA PAVGMEFETY 60 DDAYNYYNCY AREAGFSVRV KNSWFKRNSR EKYGAVLCCS SQGFKRVKDV NRLRKETRTG 120 CPAMMRMRLV DSKRWRILEV TLEHNHLLGV KGYKSIRSMG SGTKRKLSSN SELEIQPVKL 180 YRALVIDTGG DGTSNFNIRQ AKSSSDQPNQ LNLRKGDAQA MYNYLCRMQL TNPNFFYLMD 240 LNDEGRLRNV FWVDARARAA NSYFGDVIFF DNTCLSNRYE IPLVAFVGVN HHGQPVLLGC 300 GLLASETMES YIWLFKAWVT CTSGHPPQTI ITDRCKVLQS AVADVFPKSH HRFGLSHIMR 360 KVPEKLGGLR NYDAIRKALL KGVYEALKPF DFEAAWGFMI QRFGVADNEW LRLLYEDRAL 420 WAPVYLKDTF FMGMAAAQPG ETLNAFFDKY LHKQTPLKEF LDKYELALQK KHKEEVIADM 480 ESRNSSPELK TRCSFELQLS KVYTRAIFKR FQLEVEEMYS CFSTTQIHID GPITIFLVKE 540 RVLHDGNRRE IRDFEVLYNR AAAEVRCICS CFNFYGYLCR HALCVLNFNG VEEIPSKYIL 600 SRWKKDYKRL YLPDHGADNA DTERVQWFNQ LYRSALQVVE EGVISLDHYK VALRAFEESL 660 VRVHSLEKKH V |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011073402.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073399.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 isoform X1 | ||||
Refseq | XP_011073400.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 isoform X2 | ||||
Refseq | XP_011073401.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 isoform X2 | ||||
Refseq | XP_011073403.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 isoform X2 | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A2G9GNK5 | 0.0 | A0A2G9GNK5_9LAMI; Uncharacterized protein | ||||
STRING | VIT_09s0002g07400.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
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