PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011073400.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 671aa MW: 77460.5 Da PI: 8.5219

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011073400.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.2	1.2e-22	65	148	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+e+GFsvr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w++ ++ leHnH l XP_011073400.1 65 NYYNCYAREAGFSVRVKNSWFKRNSREKYGAVLCCSSQGFKRVKDVN-----RLRKETRTGCPAMMRMRLVDSKRWRILEVTLEHNHLL 148 69**************************************99988.....99*******************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.4E-20	65	148	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.0E-29	267	360	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.631	554	590	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	565	592	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MEEIPLHTEQ TTDTLPCETP PGTNDGKAAF DDQNGNLEGN NSQGRKEFVA PAVGMEFETY 60 DDAYNYYNCY AREAGFSVRV KNSWFKRNSR EKYGAVLCCS SQGFKRVKDV NRLRKETRTG 120 CPAMMRMRLV DSKRWRILEV TLEHNHLLGV KGYKSIRSMG SGTKRKLSSN SELEIQPVKL 180 YRALVIDTGG DGTSNFNIRQ AKSSSDQPNQ LNLRKGDAQA MYNYLCRMQL TNPNFFYLMD 240 LNDEGRLRNV FWVDARARAA NSYFGDVIFF DNTCLSNRYE IPLVAFVGVN HHGQPVLLGC 300 GLLASETMES YIWLFKAWVT CTSGHPPQTI ITDRCKVLQS AVADVFPKSH HRFGLSHIMR 360 KVPEKLGGLR NYDAIRKALL KGVYEALKPF DFEAAWGFMI QRFGVADNEW LRLLYEDRAL 420 WAPVYLKDTF FMGMAAAQPG ETLNAFFDKY LHKQTPLKEF LDKYELALQK KHKEEVIADM 480 ESRNSSPELK TRCSFELQLS KVYTRAIFKR FQLEVEEMYS CFSTTQIHID GPITIFLVKE 540 RVLHDGNRRE IRDFEVLYNR AAAEVRCICS CFNFYGYLCR HALCVLNFNG VEEIPSKYIL 600 SRWKKDYKRL YLPDHGADNA DTERVQWFNQ LYRSALQVVE EGVISLDHYK VALRAFEESL 660 VRVHSLEKKH V

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MEEIPLHTEQ TTDTLPCETP PGTNDGKAAF DDQNGNLEGN NSQGRKEFVA PAVGMEFETY  60
DDAYNYYNCY AREAGFSVRV KNSWFKRNSR EKYGAVLCCS SQGFKRVKDV NRLRKETRTG  120
CPAMMRMRLV DSKRWRILEV TLEHNHLLGV KGYKSIRSMG SGTKRKLSSN SELEIQPVKL  180
YRALVIDTGG DGTSNFNIRQ AKSSSDQPNQ LNLRKGDAQA MYNYLCRMQL TNPNFFYLMD  240
LNDEGRLRNV FWVDARARAA NSYFGDVIFF DNTCLSNRYE IPLVAFVGVN HHGQPVLLGC  300
GLLASETMES YIWLFKAWVT CTSGHPPQTI ITDRCKVLQS AVADVFPKSH HRFGLSHIMR  360
KVPEKLGGLR NYDAIRKALL KGVYEALKPF DFEAAWGFMI QRFGVADNEW LRLLYEDRAL  420
WAPVYLKDTF FMGMAAAQPG ETLNAFFDKY LHKQTPLKEF LDKYELALQK KHKEEVIADM  480
ESRNSSPELK TRCSFELQLS KVYTRAIFKR FQLEVEEMYS CFSTTQIHID GPITIFLVKE  540
RVLHDGNRRE IRDFEVLYNR AAAEVRCICS CFNFYGYLCR HALCVLNFNG VEEIPSKYIL  600
SRWKKDYKRL YLPDHGADNA DTERVQWFNQ LYRSALQVVE EGVISLDHYK VALRAFEESL  660
VRVHSLEKKH V

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011073400.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073399.1	0.0	protein FAR1-RELATED SEQUENCE 6 isoform X1
Refseq	XP_011073400.1	0.0	protein FAR1-RELATED SEQUENCE 6 isoform X2
Refseq	XP_011073401.1	0.0	protein FAR1-RELATED SEQUENCE 6 isoform X2
Refseq	XP_011073403.1	0.0	protein FAR1-RELATED SEQUENCE 6 isoform X2
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2G9GNK5	0.0	A0A2G9GNK5_9LAMI; Uncharacterized protein
STRING	VIT_09s0002g07400.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]