PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011072925.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 529aa MW: 58384 Da PI: 5.0896 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36 | 1.2e-11 | 219 | 242 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C +++++G Ck+G +CkF+H+p XP_011072925.1 219 EDCAYYMKFGSCKFGLNCKFNHPP 242 89********************97 PP | |||||||
2 | zf-CCCH | 26.6 | 1e-08 | 265 | 288 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C++++ +G C+yG C+++Hg XP_011072925.1 265 QTECKYYLTSGGCRYGKDCNYSHG 288 679********************8 PP | |||||||
3 | zf-CCCH | 41.1 | 3e-13 | 310 | 335 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rtG CkyG++C+F+H++ XP_011072925.1 310 GEKECPYYMRTGSCKYGANCRFHHPE 335 7899********************96 PP | |||||||
4 | zf-CCCH | 28.3 | 3e-09 | 446 | 472 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ff++tG Ck+ ++CkF+H++ XP_011072925.1 446 PGEPECTFFLKTGDCKFKSNCKFHHPK 472 5799*********************96 PP | |||||||
5 | zf-CCCH | 19.7 | 1.6e-06 | 495 | 512 | 2 | 19 |
-S---SGGGGTS--TTTT CS zf-CCCH 2 ktelCrffartGtCkyGd 19 ++++C +++r+G+Ck+G+ XP_011072925.1 495 DQPICTHYHRYGICKFGP 512 689**************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.7E-5 | 214 | 243 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 215 | 242 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.633 | 215 | 243 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-9 | 219 | 242 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.84 | 262 | 290 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.6E-5 | 262 | 289 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 264 | 291 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-6 | 265 | 288 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 268 | 289 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.502 | 308 | 336 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-7 | 308 | 335 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-7 | 310 | 336 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.0E-11 | 310 | 335 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-6 | 314 | 334 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.249 | 445 | 473 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-4 | 445 | 472 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-6 | 447 | 472 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-5 | 449 | 473 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.465 | 493 | 513 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 29 | 493 | 514 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MAESPVSSST SDKPPIEKQG LGLLISHTPP SDPITSDQDI KFQPSSCSSQ NASDAGNASP 60 TEGAADGVLK EIGTAFQEEE LGNSIQRELL QLTVVQAEIE AVCEKLEAIH VTEARSDVEV 120 VKKDIDEEKD GKDAEPVDKE NEGGEDRNDA RMTKSDHIDE DKDDKDAESV EEENQNEEGD 180 DEDEGNVDGQ SGQAVTMLGR HNNSNHRRRT NYPMRPDAED CAYYMKFGSC KFGLNCKFNH 240 PPRRKNQGVK EKAMNREENF EKTGQTECKY YLTSGGCRYG KDCNYSHGSD KSSTSHIPEY 300 NFLGLPIRPG EKECPYYMRT GSCKYGANCR FHHPEPKTVA GGGSPSGYGN DRSLPSQVVS 360 SSSLSPWSAS GAFTSTSPFV PVIYPPTQGA PRPNPEWNGY QGTAYPTSER SLPTPPAFAM 420 NNLPTEINFP SQHQHDMAVQ EHPERPGEPE CTFFLKTGDC KFKSNCKFHH PKNRNPKPKA 480 NTFALNDKGL PLRPDQPICT HYHRYGICKF GPAYEAEKSG HGNETESSI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011072925.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072925.1 | 0.0 | zinc finger CCCH domain-containing protein 67 isoform X2 | ||||
TrEMBL | A0A2G9I3H6 | 0.0 | A0A2G9I3H6_9LAMI; CCCH-type Zn-finger protein | ||||
STRING | Migut.I00264.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 1e-111 | C3H family protein |