PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011072245.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 298aa MW: 33924.3 Da PI: 8.9658 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.6 | 2.1e-08 | 72 | 96 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk elC f+r G C yG++C+F+H+ XP_011072245.1 72 YKSELCLLFQR-GKCYYGANCHFSHS 96 99*********.*************8 PP | |||||||
2 | zf-CCCH | 22.2 | 2.5e-07 | 125 | 148 | 2 | 25 |
-S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartG.tCkyGdrCkFaH 25 k+++C+ ++++G C+yGd+C++ H XP_011072245.1 125 KMKECH-WFASGkDCPYGDKCQYLH 148 778899.999999************ PP | |||||||
3 | zf-CCCH | 37.4 | 4.1e-12 | 197 | 222 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + r+G C+yG +C++aHg+ XP_011072245.1 197 KTKLCMKWERFGSCPYGVKCTYAHGK 222 8***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.2E-7 | 70 | 101 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.4E-4 | 71 | 97 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.859 | 71 | 98 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-6 | 72 | 96 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-10 | 72 | 103 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-6 | 120 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.21 | 123 | 150 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.46E-6 | 123 | 151 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.46 | 124 | 151 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 125 | 148 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-8 | 194 | 226 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-13 | 194 | 226 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-5 | 195 | 222 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.117 | 195 | 223 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-9 | 197 | 222 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MSMNHFNDTQ VSNPADFGGK NTFDNCPQPR IANHQSSSIH SNFDFKKPRF SERNPNPRIP 60 LSVNRSKLSV PYKSELCLLF QRGKCYYGAN CHFSHSISDI RNPGLNTLAM EGHLNEDSKR 120 NTVRKMKECH WFASGKDCPY GDKCQYLHKC DQKVRRDVGF YRQSSAVNGG KDRSGNDQIE 180 CHSFSAGEDY DKSVFCKTKL CMKWERFGSC PYGVKCTYAH GKAELQELGS LTELENSYTS 240 RLKLPNSAAS CEMGRKIAKK LQGKRCFMDG DIKKISEVYA DWMEDRQNFH IPSSKIGS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011072245.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072245.1 | 0.0 | zinc finger CCCH domain-containing protein 39-like | ||||
TrEMBL | A0A022PZ47 | 2e-77 | A0A022PZ47_ERYGU; Uncharacterized protein | ||||
STRING | Migut.I00800.1.p | 3e-78 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13026 | 13 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 8e-32 | C3H family protein |