PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011072116.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 187aa MW: 20642.7 Da PI: 10.7271 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.8 | 2.6e-10 | 16 | 68 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54 +++E++RR ++++ +L +l+P+ s a ++ l+ + Le+A YI++L XP_011072116.1 16 ERKIIEKNRRIQMKDLCLKLVSLIPPqHSrPAEKENLTQQDQLEQAASYIQQL 68 5789**********************5554445555****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.31E-9 | 4 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.455 | 12 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-8 | 14 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-7 | 16 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0064 | 18 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 187 aa Download sequence Send to blast |
MKNESGTSSS AGSKVERKII EKNRRIQMKD LCLKLVSLIP PQHSRPAEKE NLTQQDQLEQ 60 AASYIQQLSA RVEEMRRRKA QALAAAAAAA NASTKRGPPS TSRLVSPVLK FRVFGQSLEV 120 VLISGLTRNF SLHKVVSILE DEGAEVNTVN LSTIGDKVFH TIHAQVKVSR VGMDTSRMSE 180 RLHELIS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011072116.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072116.1 | 1e-134 | uncharacterized protein LOC105157401 | ||||
TrEMBL | A0A2N9FLY0 | 1e-60 | A0A2N9FLY0_FAGSY; Uncharacterized protein | ||||
STRING | POPTR_0015s08580.1 | 7e-60 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6083 | 14 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20970.1 | 3e-22 | bHLH family protein |