PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011072087.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | FAR1 | ||||||||
Protein Properties | Length: 674aa MW: 78200 Da PI: 6.6714 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 72.5 | 9.2e-23 | 64 | 148 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YAk GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++ +k+ + ++w++ ++el+HnH+++ XP_011072087.1 64 DFYNVYAKGQGFGIRVSNSWFRSKRRERYRAKLSCSSAGFKKKSDAN-----NPRPETRTGCPAMVIIKLVEAKRWRIVEVELDHNHPVS 148 6*********************99999****************9988.....9**********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.9E-21 | 64 | 149 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.2E-26 | 270 | 361 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.446 | 556 | 592 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.9E-6 | 567 | 594 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 3.7E-4 | 568 | 591 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MEPSPLEAVC LNSEPLFGEG DQYEDEGDCS MLEHSDEAHE MQLKKEFLLP TVGLEFESFD 60 EAYDFYNVYA KGQGFGIRVS NSWFRSKRRE RYRAKLSCSS AGFKKKSDAN NPRPETRTGC 120 PAMVIIKLVE AKRWRIVEVE LDHNHPVSPE VKRFYKSHKK MFLAAKNGQQ SEPVKEIHTI 180 RLYRTAVVDA ICNGHSKTDG RVDRNPTNHS KHLELKEGDA PAVYNFFCRM KLTNPNFFYL 240 MDLDAEGHLN NVFFADARSR IAYNYFSDTV TIDTTSLTNK YEIPLISFVG INHHGQSVLL 300 GCGFLGHESV EYFVWMFRAW LTCMQGPHPQ VIVTDQSKPL DIAVSEVFPQ ARHCYCLSYI 360 MHRVPEKLGG LTGFETIKRQ LNKAVYDSLK ISEFEIFWAE MINQHSLTDN KWLQLLYADR 420 QRWVPVYLKD ISFVGILPIN DCECSSAFFD GYVHKHTSFK EFLDKYDLAL QRKHLKEAME 480 DFESRNSSFE LKTKSNFELQ LSKVYTKGMF KKCQIEVEGM HSCFNTKQVN SDGSVMTFVV 540 KEQKQVEGND KEVKHYEVLY EATQIEVRCI CSLFNFKGFL CRHALSVLNY KGVEEIPLQY 600 ILSRWSIDYK RNFLLDAGFS DADVDSPLQW YNHLFRRSLQ LLEEGAQSQE HYEAVTRELD 660 TLLTKFSLLD NRFM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011072087.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072087.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A2G9GVR5 | 0.0 | A0A2G9GVR5_9LAMI; Uncharacterized protein | ||||
STRING | Migut.O00281.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1347 | 19 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
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