PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011072049.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

MYB_related

Protein Properties

Length: 458aa MW: 50320.9 Da PI: 5.5682

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011072049.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.2	2.5e-15	55	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++v+a k++G W+ I +++ ++t+ q++s+ qk+ XP_011072049.1 55 RERWTEEEHKRFVEALKLYGRA-WRQIEEHVA-TKTAIQIRSHAQKF 99 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.83E-16	49	104	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.03	50	104	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.5E-16	53	102	IPR006447	Myb domain, plants
SMART	SM00717	7.7E-12	54	102	IPR001005	SANT/Myb domain
Pfam	PF00249	7.9E-12	55	98	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-8	55	95	IPR009057	Homeodomain-like
CDD	cd00167	5.07E-9	57	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MVAEAKDQTA GPCRDAFVAV SSQLESVTTQ SKALSSNGNG YAPKVRKPYT ITKQRERWTE 60 EEHKRFVEAL KLYGRAWRQI EEHVATKTAI QIRSHAQKFF AKVTRDPCVD AEGSLSPIEI 120 PPPRPKKKPL HPYPRKTVDP ANTEVVVSNQ VGGTTESAAE RENYSPTSVF SAIGSDNLES 180 TVAEMHKSRL SPASCATDAL SGNDNEYATS NISSKEEDGF HLSMKISSAS VPDNKTTMKF 240 ELFPQETESS LDSPNAGEPY TSIKLFGKTV VVRDTPKQPL DVVENSESLL PGAVDDKSEN 300 NNDKFAQGLS PNNLDSRVVF GFVSNSSSPA CLPPQPLANI YCPMENLITL PWSTWYHSTA 360 FPYSSSYNNT VIENFEGLKD EELQREGSLV GSNSGSTGEV NNDNRNSDVV DSKQLSSPGK 420 KECGKGFVPY KRCLAERDDK LSISFLQERE GQRARVCS

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MVAEAKDQTA GPCRDAFVAV SSQLESVTTQ SKALSSNGNG YAPKVRKPYT ITKQRERWTE  60
EEHKRFVEAL KLYGRAWRQI EEHVATKTAI QIRSHAQKFF AKVTRDPCVD AEGSLSPIEI  120
PPPRPKKKPL HPYPRKTVDP ANTEVVVSNQ VGGTTESAAE RENYSPTSVF SAIGSDNLES  180
TVAEMHKSRL SPASCATDAL SGNDNEYATS NISSKEEDGF HLSMKISSAS VPDNKTTMKF  240
ELFPQETESS LDSPNAGEPY TSIKLFGKTV VVRDTPKQPL DVVENSESLL PGAVDDKSEN  300
NNDKFAQGLS PNNLDSRVVF GFVSNSSSPA CLPPQPLANI YCPMENLITL PWSTWYHSTA  360
FPYSSSYNNT VIENFEGLKD EELQREGSLV GSNSGSTGEV NNDNRNSDVV DSKQLSSPGK  420
KECGKGFVPY KRCLAERDDK LSISFLQERE GQRARVCS

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011072049.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020548215.1	0.0	protein REVEILLE 7-like isoform X2
Swissprot	F4KGY6	3e-48	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	A0A4D8ZQC5	1e-130	A0A4D8ZQC5_SALSN; Circadian clock associated 1
STRING	Migut.O00255.1.p	1e-106	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-44	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]