PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011071525.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 770aa MW: 88237.9 Da PI: 8.2808

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011071525.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.2	1e-21	52	126	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++YA++vGF++r+ + ++s+ +g++++r+fvCskeg++++ trtgC a ++v+k ++gkw+++++++eHnHe+ XP_011071525.1 52 EFYSAYATQVGFKIRIGQLYRSRVDGSVISRRFVCSKEGFQTN--------------TRTGCPAFIRVQKADSGKWVLANVKKEHNHEF 126 6*************************************876..............79**************************98 PP
2	FAR1	66.5	7e-21	203	278	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA ++GF++r+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+w+v++l++eHnHe+ XP_011071525.1 203 KFYYTYAANTGFRIRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGAYMRIQRQESGRWVVDRLQKEHNHEFE 278 6************************************9998..............4899************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-17	52	126	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.3E-16	203	277	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.5E-30	379	471	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.435	656	692	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.9E-8	662	689	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.6E-8	667	694	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence Send to blast
MNREVLGNFM TVRTKPAALV VAKGNGYRDD AGQSKVEPHV GLEFDSAEEA QEFYSAYATQ 60 VGFKIRIGQL YRSRVDGSVI SRRFVCSKEG FQTNTRTGCP AFIRVQKADS GKWVLANVKK 120 EHNHEFEASG ELCPPRIQRK SFPTPRSSCG GASRTGIRSH EDDGPSGVVD MKRLKKEEID 180 GIVGPIGEPY KGLEFNCANE AYKFYYTYAA NTGFRIRIGQ LFRSKNDGSI TSRRFVCSKE 240 GHQHPSRVGC GAYMRIQRQE SGRWVVDRLQ KEHNHEFESP TDPSRTVTVA SKGYREEGNS 300 VLENLDLVET NGGLSLVKRI RESNIDSDWY NLLLEYFQSR QAEDTGFFYG VEMHEGKGMS 360 LFWADARSRF ACTQFGDAIV FDTTYRRGSY LVPFASFVGV NHHRQPVLLG CALVADESEE 420 SFTWIFQAWL RAMSGHRPLS IIADQDRAIQ NAIAQVFPGT HHRFSAWQIL AKEQENLGAL 480 LSMDGEFKYE YETCIFQSQT ASEFDSAWNM LMNKYNLREN IWFKEMYRMR KSWVPLHIKG 540 TFFAGIPVDG SLKPYFSTIL TPQTPPNEFV VRYEKALEQR REEERKEDFN SFNLQAVMHT 600 KDPIEEQCRR LYTITMFKVF QKELLECYSY VGIKINVEGA ISRYLVQKCG NGDERNTVAF 660 NASNLNITCS CKMFEFEGVL CRHALKVFQI MNIRELPSRY ILHRWTKNAK YGILRDADSG 720 GGAQDFKALM LWSLREEARN YIDAGAASLE RYKLAFEIMQ EGRRNLCWQN

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence Send to blast

MNREVLGNFM TVRTKPAALV VAKGNGYRDD AGQSKVEPHV GLEFDSAEEA QEFYSAYATQ  60
VGFKIRIGQL YRSRVDGSVI SRRFVCSKEG FQTNTRTGCP AFIRVQKADS GKWVLANVKK  120
EHNHEFEASG ELCPPRIQRK SFPTPRSSCG GASRTGIRSH EDDGPSGVVD MKRLKKEEID  180
GIVGPIGEPY KGLEFNCANE AYKFYYTYAA NTGFRIRIGQ LFRSKNDGSI TSRRFVCSKE  240
GHQHPSRVGC GAYMRIQRQE SGRWVVDRLQ KEHNHEFESP TDPSRTVTVA SKGYREEGNS  300
VLENLDLVET NGGLSLVKRI RESNIDSDWY NLLLEYFQSR QAEDTGFFYG VEMHEGKGMS  360
LFWADARSRF ACTQFGDAIV FDTTYRRGSY LVPFASFVGV NHHRQPVLLG CALVADESEE  420
SFTWIFQAWL RAMSGHRPLS IIADQDRAIQ NAIAQVFPGT HHRFSAWQIL AKEQENLGAL  480
LSMDGEFKYE YETCIFQSQT ASEFDSAWNM LMNKYNLREN IWFKEMYRMR KSWVPLHIKG  540
TFFAGIPVDG SLKPYFSTIL TPQTPPNEFV VRYEKALEQR REEERKEDFN SFNLQAVMHT  600
KDPIEEQCRR LYTITMFKVF QKELLECYSY VGIKINVEGA ISRYLVQKCG NGDERNTVAF  660
NASNLNITCS CKMFEFEGVL CRHALKVFQI MNIRELPSRY ILHRWTKNAK YGILRDADSG  720
GGAQDFKALM LWSLREEARN YIDAGAASLE RYKLAFEIMQ EGRRNLCWQN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011071525.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071525.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A2G9HD95	0.0	A0A2G9HD95_9LAMI; Uncharacterized protein
STRING	Migut.N00138.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]