PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071465.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 488aa    MW: 51287.8 Da    PI: 8.1538
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071465.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96.2e-124772227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +++rtG C yG rC+F+H++
  XP_011071465.1 47 DEPDCIYYLRTGSCGYGTRCRFNHPR 72
                    6899********************96 PP
2zf-CCCH37.73.4e-1295118427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     + C++++rtG Ck+G++Ck++H++
  XP_011071465.1  95 PVCQYYMRTGMCKFGASCKYHHPK 118
                     79********************96 PP
3zf-CCCH35.22e-11139164227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++ +tG+Ck+G +CkF+H++
  XP_011071465.1 139 GEKECSYYVKTGQCKFGVTCKFHHPQ 164
                     7899********************97 PP
4zf-CCCH37.53.8e-12315341127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++++tG Ck+G++Ck++H+p
  XP_011071465.1 315 PGEPECQYYLKTGDCKFGSTCKYHHPP 341
                     5799*********************97 PP
5zf-CCCH36.77.1e-12363387327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +lC+++a++G Ck+G++CkF H++
  XP_011071465.1 363 APLCSHYAQNGVCKFGPSCKFDHPM 387
                     68*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2114573IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-44572IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-94772IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-64973IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-55172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.46991119IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-791118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-693119IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-995118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-596117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389137165IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5137164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6139165IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-9139164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4143163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.741314342IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-6314341IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9316341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5319341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4320341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309360388IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-7360387IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6363390IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9363387IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5365385IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MERYSGTQVM EEMPVDPVAE WAAPGGETGL EEPMWQLGLE SYPERPDEPD CIYYLRTGSC  60
GYGTRCRFNH PRDRGAAVGA LRASGGGYPE RISQPVCQYY MRTGMCKFGA SCKYHHPKQG  120
IGSSAPIMLN FYGYPLRPGE KECSYYVKTG QCKFGVTCKF HHPQPTGVRV PGPAVAPGPT  180
LAPVPVPGPL AAPAVAAAVY PTVQSPSVQS SQQYGVIPGN WPVARPAMLP GSYFPGSYGP  240
MLLPPGVVPV PGWTPYPAPV SPVAPATTQT SGGPNYGITQ LSPSAAAYTG PYISITSSAG  300
PSSSSQKESP FPERPGEPEC QYYLKTGDCK FGSTCKYHHP PEWSAPKSNF LLSPMGLPLR  360
PGAPLCSHYA QNGVCKFGPS CKFDHPMRTL SYSPSASSLT DMPVAPYPVG STNATLAPSS  420
SSSDLRPELL SGLSKDAPHM SSMNSSSASV GSIFSKSGSA PQSGVQHSGQ GSAGVSSTSR  480
GGDVHTSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011071465.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071464.10.0zinc finger CCCH domain-containing protein 34
RefseqXP_011071465.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ5NAW21e-156C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A2G9GS850.0A0A2G9GS85_9LAMI; CCCH-type Zn-finger protein
STRINGMigut.G00186.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.13e-75C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]