PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071014.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 181aa    MW: 20597.6 Da    PI: 10.4051
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071014.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-071081481454
                     HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     d+i +  ++L++l+P+ + + +s K+s + +L+++++YI++L
  XP_011071014.1 108 DQIADLVSKLQQLIPEiR-NRRSDKVSASKVLQETCNYIRNL 148
                     6899999*********77.89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.2E-892163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.57594148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-8108164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-5108148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-4108152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MHFVFIASNT TSFSVFCISY FFPTPPSPHN LSPNNFASSL LLNLNPPPSH FPFPISPRIK  60
KYSSTTTTYF SLHNLGFLYL LKKKKRLLTM SSRRSRSRQS GVSRISDDQI ADLVSKLQQL  120
IPEIRNRRSD KVSASKVLQE TCNYIRNLHR EVDDLSDRLS ELLDSTDSDS AQAAIIRSLL  180
M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086LKKKKRL
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011071014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071014.11e-128transcription factor PRE6-like
SwissprotQ9LJX16e-39PRE5_ARATH; Transcription factor PRE5
TrEMBLM5XQD95e-46M5XQD9_PRUPE; Uncharacterized protein
STRINGEMJ281148e-47(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-28bHLH family protein