PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070609.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 569aa    MW: 62563.8 Da    PI: 5.4429
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070609.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4617.2e-1412005671374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++Ll+cAeav++++++la+al++++  la +++ +m+++a+yf+eALa+r++r    ly    ps+ +++  ++    +  f+e++P+lkf+h
  XP_011070609.1 200 LVHTLLACAEAVQQENFKLAEALVKNIGFLAVSQAGAMRKVATYFAEALARRIYR----LY----PSNPQDTAFTDM--LQMHFYETCPYLKFAH 284
                     689****************************************************....44....444443334444..4446************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++g++rvH+iDf+++qG+QWpaLlqaLa Rp+gpps+R+Tg+g+p++++++ l+e+g+rLa++Ae+++v+fe++ +va++l+dl+
  XP_011070609.1 285 FTANQAILEAFAGKNRVHVIDFSMKQGMQWPALLQALALRPGGPPSFRLTGIGPPSHDNTDHLQEVGWRLAQLAETINVEFEYRGFVANSLADLD 379
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...... 279
                      +++++++gE++aVn++++lh+ll++++++e+    vLk+v++l+P++++vveqea+hn++ Fl+rf+e+l+yys+lfdsle+  +  +      
  XP_011070609.1 380 ASMFDIREGESVAVNSIFELHQLLARPGAIEK----VLKVVRELKPEILTVVEQEANHNGNVFLDRFTESLHYYSTLFDSLESCGGGSNgsdgvv 470
                     ********************************....*********************************************88733333345566 PP

            GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                      ++++++++++lgr+i+nvvacega+r+erhetl++Wr+r+++aGF pv+l+++a+kqa++ll+ ++ +dgyrv+e++g+l+lgW++rpL+++Sa
  XP_011070609.1 471 sDQDKVMSEVYLGRQICNVVACEGADRVERHETLAQWRSRFGSAGFVPVHLGSNAYKQASMLLALFAgGDGYRVDENNGCLMLGWHTRPLIATSA 565
                     699******************************************************************************************** PP

            GRAS 373 Wr 374
                     W+
  XP_011070609.1 566 WK 567
                     *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011295.6E-2836109No hitNo description
PfamPF120412.2E-303697IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098567.825174546IPR005202Transcription factor GRAS
PfamPF035142.5E-138200567IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MKRDHMNQEN FSSSGSCSSS GKAKMWSCEA EEAGVDELFA VLGYNVKSSD MAEVAQKIQQ  60
LEEVMGSVQH DGLSHLASET VHYNPSDLSS WLESMISITS VDNTCSVNSR AQMAVDLDFG  120
SDLIAIPGKA VFPRTEPPVA PPPPLQPPQH QHQPLAKRLK TSPYIDNSVG GLQSEPVFAR  180
PVESTRPVVL VDSQENGIRL VHTLLACAEA VQQENFKLAE ALVKNIGFLA VSQAGAMRKV  240
ATYFAEALAR RIYRLYPSNP QDTAFTDMLQ MHFYETCPYL KFAHFTANQA ILEAFAGKNR  300
VHVIDFSMKQ GMQWPALLQA LALRPGGPPS FRLTGIGPPS HDNTDHLQEV GWRLAQLAET  360
INVEFEYRGF VANSLADLDA SMFDIREGES VAVNSIFELH QLLARPGAIE KVLKVVRELK  420
PEILTVVEQE ANHNGNVFLD RFTESLHYYS TLFDSLESCG GGSNGSDGVV SDQDKVMSEV  480
YLGRQICNVV ACEGADRVER HETLAQWRSR FGSAGFVPVH LGSNAYKQAS MLLALFAGGD  540
GYRVDENNGC LMLGWHTRPL IATSAWKLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-6919556614378Protein SCARECROW
5b3h_A6e-6919556613377Protein SCARECROW
5b3h_D6e-6919556613377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070609.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070609.10.0DELLA protein GAI1
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2G9HQV20.0A0A2G9HQV2_9LAMI; Uncharacterized protein
STRINGMigut.E00445.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein