PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011070504.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 578aa MW: 62003.6 Da PI: 8.9738

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011070504.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H XP_011070504.1 75 FVCEVCNKGFQREQNLQLHRRGH 97 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.28E-7	74	97	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.0E-6	74	97	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0041	75	97	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	3.8E-5	75	97	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	11.094	75	97	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2
SMART	SM00355	140	116	146	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.9E-5	139	172	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.28E-7	146	171	No hit	No description
SMART	SM00355	88	151	171	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MAASSSSAFL AMRDENENQL HQQQQQLISS APASQPQAAS ASSSIKKRRN QPGNPNPDAE 60 VIALSPKTLM ATNRFVCEVC NKGFQREQNL QLHRRGHNLP WKLRQKSTKE VKRKVYLCPE 120 PTCVHHDPAR ALGDLTGIKK HYSRKHGEKK YKCDKCSKKY AVHSDWKAHS KTCGTREYRC 180 DCGTLFSRRD SFITHRAFCD ALAQESARNL NPPSLSSIGS HLLGLSQMSS AQDHQINHQP 240 NLSNHHDILR LGSGGRPSPQ FETLVGQGFR PSAGSLPPSP ALFLQPQVAM NHEENQSPHG 300 LLPNKPSLHG LMQLPQLQVN NANTSSASTA SLFNLSFFPS SSNTTSTMDG SHHSGGGEDH 360 STLFSSGNLM SIAIPSLYSA SHAIQNPSAA HMSATALLQK AAQLGSTTSN PGASSLLKSF 420 GKSSTDDHHS SLDVGHSFAG GSPAAVFGGN INGGGNHLHD LVMNSIANAG GSSSSGTIFG 480 GYSTGNHDDQ QESSIGHDHD HHHHQYRGLI RGNSMNPGGG FSSLEQGRLT RDFLGVGEIV 540 RSVREQNNGM DMISSLDSQG KSTGSQSHGF GGGNLNFQ

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MAASSSSAFL AMRDENENQL HQQQQQLISS APASQPQAAS ASSSIKKRRN QPGNPNPDAE  60
VIALSPKTLM ATNRFVCEVC NKGFQREQNL QLHRRGHNLP WKLRQKSTKE VKRKVYLCPE  120
PTCVHHDPAR ALGDLTGIKK HYSRKHGEKK YKCDKCSKKY AVHSDWKAHS KTCGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAQESARNL NPPSLSSIGS HLLGLSQMSS AQDHQINHQP  240
NLSNHHDILR LGSGGRPSPQ FETLVGQGFR PSAGSLPPSP ALFLQPQVAM NHEENQSPHG  300
LLPNKPSLHG LMQLPQLQVN NANTSSASTA SLFNLSFFPS SSNTTSTMDG SHHSGGGEDH  360
STLFSSGNLM SIAIPSLYSA SHAIQNPSAA HMSATALLQK AAQLGSTTSN PGASSLLKSF  420
GKSSTDDHHS SLDVGHSFAG GSPAAVFGGN INGGGNHLHD LVMNSIANAG GSSSSGTIFG  480
GYSTGNHDDQ QESSIGHDHD HHHHQYRGLI RGNSMNPGGG FSSLEQGRLT RDFLGVGEIV  540
RSVREQNNGM DMISSLDSQG KSTGSQSHGF GGGNLNFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-33	147	208	3	64	Zinc finger protein JACKDAW
5b3h_F	7e-33	147	208	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00255	DAP	Transfer from AT2G02070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011070504.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020547771.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q9ZUL3	1e-124	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A4D8YP47	0.0	A0A4D8YP47_SALSN; Uncharacterized protein
STRING	Migut.E00578.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-103	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]