PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011070328.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 817aa MW: 90634.7 Da PI: 5.3959 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.5 | 3e-20 | 92 | 147 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k XP_011070328.1 92 KKRYHRHTTRQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 147 688999***********************************************998 PP | |||||||
2 | START | 146.4 | 2.6e-46 | 292 | 517 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 la + ++elvk+ +ep+Wv + + +n +e+ + f+ s + +++ea r ++vv+m++ +lv +ld + +W e ++ +a+t XP_011070328.1 292 LAVSSMDELVKMCHTAEPLWVPAAdtgkQVLNLEEYARMFSWSANlkqhspqFRTEATRHTAVVIMNSITLVDAFLDAN-KWMELFPciisRAKT 385 57789*******************88888888888888888777799999*****************************.*************** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168 l+v+ s g l+lm+ae q+lsplvp R+ f+Ry++ ++g+w+ivd +d + +s++ +++pSg++i++++ng+s+vtwve XP_011070328.1 386 LQVVHSEvsghanGSLHLMYAEVQVLSPLVPtREAHFLRYCQHnAEEGTWAIVDFPLDGLHNDY-PPSFAYYKRRPSGCIIQDMPNGYSRVTWVE 479 *******************************************9**************666555.45788888********************** PP -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 h+++++ +h+++ slv+sg+a+ga++w+a lqrqce+ XP_011070328.1 480 HAEVEDGPIHQVFSSLVSSGAAFGAQRWLAVLQRQCER 517 ************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 79 | 143 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.28E-19 | 80 | 150 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.232 | 89 | 149 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-18 | 90 | 153 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-17 | 92 | 147 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.57E-19 | 92 | 150 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 124 | 147 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.373 | 282 | 520 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.39E-32 | 283 | 519 | No hit | No description |
CDD | cd08875 | 5.71E-116 | 286 | 516 | No hit | No description |
SMART | SM00234 | 3.7E-34 | 291 | 517 | IPR002913 | START domain |
Pfam | PF01852 | 1.3E-38 | 293 | 517 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.93E-17 | 535 | 775 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 817 aa Download sequence Send to blast |
MFGDCQVLSA MGGNGMPSDN ALYSTSMQHP NTTFMPAINP FNIFSPIIPQ KEEITGMAKS 60 KEELMESGSG SEHIEGFSGN EQEAEQQPQA KKKRYHRHTT RQIQEMEALF KECPHPDDKQ 120 RLKLSQELGL KPRQVKFWFQ NRRTQMKAQQ DRQDNVVLRA ENESLKNENY RLQATLRNIV 180 CPNCGGPAMM GEMGYDEQQL RIENARLKEE LERMCCLVSQ YTGRPMPGMG PPPLLPTSLD 240 LDVSSYPRKF EQDHMTNCPP DHMIPLPFMP ENSQFPGNAL ILEEERPLAL DLAVSSMDEL 300 VKMCHTAEPL WVPAADTGKQ VLNLEEYARM FSWSANLKQH SPQFRTEATR HTAVVIMNSI 360 TLVDAFLDAN KWMELFPCII SRAKTLQVVH SEVSGHANGS LHLMYAEVQV LSPLVPTREA 420 HFLRYCQHNA EEGTWAIVDF PLDGLHNDYP PSFAYYKRRP SGCIIQDMPN GYSRVTWVEH 480 AEVEDGPIHQ VFSSLVSSGA AFGAQRWLAV LQRQCERLAS LMARNISDLG VIPSPEARKS 540 LMNLAQRMTR TFCLNISTSY GQSWTALSDC ADDTVRITTR KVTEPGQPNG LILSAVSTTW 600 LPYQHNQVFD FLRDERRRAQ LEVLSNGNSL HEVAHIANGS HPGNCISLLR INVASNSSQS 660 VELVLQESCS DDSGSIVVYT TIDVDAIQMA MNGEDPSCIP LLPLGFVIVP MGQIANNDSG 720 IADSKQASEN GHLPDSGCLL TVGLQVLAST IPSAKLNLSS VTAINHHLCN TVQQINAVLG 780 NISGNNFSEN VDVLGSNIDP EPALPAENKP TDPCATS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011070328.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070327.1 | 0.0 | homeobox-leucine zipper protein HDG5 isoform X1 | ||||
Refseq | XP_011070328.1 | 0.0 | homeobox-leucine zipper protein HDG5 isoform X1 | ||||
Swissprot | A2ZAI7 | 0.0 | ROC3_ORYSI; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | A0A2G9HN19 | 0.0 | A0A2G9HN19_9LAMI; Transcription factor, contains HOX domain | ||||
STRING | Migut.E00753.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |