PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011070144.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 349aa    MW: 38818.1 Da    PI: 4.7492
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011070144.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.66.9e-112733131055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     rrRR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_011070144.1 273 RRRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 313
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-14262327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.161263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-13268322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-12269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-8273313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00181279317No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEIFGAFLDQ EWESLSSMFS TGENPDFLLH CNSSSSLFPS NGEFPSAAAE NVAAGADETP  60
FFPVDHMLGT NFYCISQESS ISSNENKQLP NGLNFPHHDD FSSNRTEPVN FYAMDCNNVD  120
NAVMVPVFPD DVMEEILHLK AEPEQPTETA DSCKEVQLKR KYEASGIQIK DKSMSEDYSS  180
KKKPRVSKVE QKNKSKKNKK GILQDRVDEA EEVNGGGNRQ SSSSCSSEDD SNASQELNGG  240
SPSESKVSAS LNSNGKARAT RGSATDPQSL YARRRRERIN ERLKILQNLV PNGTKVDIST  300
MLEEAVHYVK FLQLQIKLLS SDDLWMYAPL AYNGMDIGIY QKISPNLWP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011070144.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547594.10.0transcription factor bHLH54
SwissprotQ84WK09e-58BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A022R8Q59e-89A0A022R8Q5_ERYGU; Uncharacterized protein
TrEMBLM5XIA24e-88M5XIA2_PRUPE; Uncharacterized protein
STRINGMigut.C00492.1.p8e-90(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.17e-46ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]