PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011070053.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C2H2 | ||||||||
Protein Properties | Length: 359aa MW: 41394.5 Da PI: 9.3335 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.5 | 5.3e-06 | 62 | 83 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+ sF+ + +Lk+H+++H XP_011070053.1 62 TCEVCSSSFRKPAHLKQHMQSH 83 7*******************99 PP | |||||||
2 | zf-C2H2 | 17.7 | 9.6e-06 | 89 | 113 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp +C+ s++rk++L+rH+ H XP_011070053.1 89 FTCPvdNCHSSYRRKDHLTRHMIQH 113 89********************887 PP | |||||||
3 | zf-C2H2 | 17.7 | 9.7e-06 | 118 | 143 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp C+++F + n+krHi+ H XP_011070053.1 118 FECPieECKRRFAFQGNMKRHIKElH 143 89*********************988 PP | |||||||
4 | zf-C2H2 | 19.9 | 2e-06 | 157 | 181 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+Cp Cgk+F+ s L +H +H XP_011070053.1 157 YVCPelGCGKVFKYLSKLSKHEDSH 181 9********************9888 PP | |||||||
5 | zf-C2H2 | 13.9 | 0.00015 | 248 | 272 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C +F + snL++H++ H XP_011070053.1 248 KCSfkGCLHTFATESNLNQHMKAvH 272 688889***************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 29 | 19 | 41 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.725 | 19 | 46 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-4 | 57 | 80 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.05 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.653 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.87E-10 | 73 | 115 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-12 | 81 | 115 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0048 | 89 | 113 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.598 | 89 | 118 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 91 | 113 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.87E-6 | 116 | 144 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.7E-6 | 116 | 140 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.023 | 118 | 143 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.658 | 118 | 148 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 120 | 143 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.8E-7 | 153 | 181 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0028 | 157 | 181 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.72 | 157 | 186 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 159 | 181 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.3 | 189 | 214 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.9E-4 | 191 | 212 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 191 | 214 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 23 | 217 | 238 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.17E-7 | 230 | 285 | No hit | No description |
SMART | SM00355 | 0.0011 | 247 | 272 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.279 | 247 | 277 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 248 | 274 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 249 | 272 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-4 | 275 | 300 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 9.4 | 278 | 304 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 280 | 304 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MEIEAEKARV VIFRDIRRYY CEYCGICRSK KSLISSHILS HHQEENVTEV NNGTSGGDKL 60 STCEVCSSSF RKPAHLKQHM QSHSLERPFT CPVDNCHSSY RRKDHLTRHM IQHQGKLFEC 120 PIEECKRRFA FQGNMKRHIK ELHQESSSTN VEPPKEYVCP ELGCGKVFKY LSKLSKHEDS 180 HVKLDTAGAF CSEPGCMKYF TNKQSLKEHL CSCHQYIVCD KCGSKQLKKN FKRHLSMHEA 240 AISMERIKCS FKGCLHTFAT ESNLNQHMKA VHLGLKPYAC SIPGCHMKFA FKHVRDKHKK 300 SGYHVYTPGN FEESDEQFRS RPRGGRKRKR PTIETLLRKR VVPPTNSDVS KLLSADSDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tf6_A | 3e-14 | 66 | 209 | 20 | 155 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
1tf6_D | 3e-14 | 66 | 209 | 20 | 155 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 320 | 328 | RPRGGRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011070053.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070053.1 | 0.0 | transcription factor IIIA isoform X1 | ||||
Swissprot | Q84MZ4 | 1e-133 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A2Z7CXK8 | 1e-179 | A0A2Z7CXK8_9LAMI; Zinc finger protein 16-like | ||||
STRING | Migut.K00168.1.p | 1e-178 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3644 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-118 | transcription factor IIIA |