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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Sphfalx0466s0002.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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| Family | G2-like | ||||||||
| Protein Properties | Length: 301aa MW: 33583.1 Da PI: 4.5993 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 32.8 | 1.6e-10 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55
m+v+gLt++hvkSHLQkYRl
Sphfalx0466s0002.1.p 1 MGVQGLTIYHVKSHLQKYRL 20
99*****************8 PP
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| Protein Features ? help Back to Top | ||||||
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 1.2E-9 | 1 | 21 | IPR009057 | Homeodomain-like |
| Pfam | PF14379 | 2.7E-23 | 53 | 99 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 301 aa Download sequence Send to blast |
MGVQGLTIYH VKSHLQKYRL AKYIPDSLSD GGTSDKKKTS ADLFPSLDAT SGIQITEALC 60 MQMEVQKRLH EQLEVQRNLQ LRIEAQGKYL QQIIEERQRR SALSGTPVTT NSFFEEMDMT 120 AAASRESSAA KGEIVVPFAH DPITSTSDET EASHVHATKE EEEEAIEVHT MPRSIKDVIR 180 DVSLPDPQDL EEEKSPNKHD EFLAHGKQGE SAAADDNELL VGHYYTTQNG DIPDPSNSDD 240 RSSQGRDSVS NFATIHTRSD GDSSKWCERS FVSDVVEVEE QVNFITTIRP GSPKPEVYLM 300 M |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT2G01060.2 | 2e-50 | G2-like family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Sphfalx0466s0002.1.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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