PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0442s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | GRAS | ||||||||
Protein Properties | Length: 434aa MW: 46696.5 Da PI: 4.3295 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 225.5 | 2.6e-69 | 137 | 359 | 17 | 250 |
GRAS 17 lelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn.sseelaalklfsevsPilkfshltaNqaI 102 l +a+ + +m +aa+f eAL +r+++ s+s+ ++++++ +++n se l+++ ++e++P+lkfsh+t NqaI Sphfalx0442s0002.1.p 137 LVRAE------------ETVTMGEVAAHFIEALTHRIYGgtSSSQDSSSCNVVGYESNNyLSELLHFQ--YYETCPYLKFSHFTSNQAI 211 44443............4458999**************954444445555555555555344554443..9****************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 lea+ege+ vH+iD+++++GlQWpaL+qaLa Rp+gppsl +Tg+g+p++g ++ l+e+g +La++A++++++f+f +va +l+++++ Sphfalx0442s0002.1.p 212 LEAFEGEKWVHVIDLNLMHGLQWPALIQALALRPGGPPSLCLTGIGPPQAGGNNGLQEIGMKLAQLAASVNIEFDFWGVVALKLNEVKP 300 *******************************************************************************999******* PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 ++L+v pgE++aVn+vlqlh+ll++++ ++devL+ + +l+Pk+v+vve+ a+hn Sphfalx0442s0002.1.p 301 WMLQVLPGEVVAVNSVLQLHQLLNSDGGPVLAIDEVLHSILGLKPKIVTVVEHKANHNV 359 **************************999999*************************85 PP | |||||||
2 | GRAS | 47 | 4.5e-15 | 385 | 431 | 328 | 374 |
GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +l+++a kqaklll+ +++dgy+vee++g+l+lgW++rpL+++SaW+ Sphfalx0442s0002.1.p 385 RLGSTALKQAKLLLSLFPGDGYQVEENNGCLTLGWHTRPLIAFSAWQ 431 6899******************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12041 | 4.5E-9 | 2 | 52 | IPR021914 | Transcriptional factor DELLA, N-terminal |
PROSITE profile | PS50985 | 35.75 | 72 | 433 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.9E-67 | 137 | 359 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-12 | 385 | 431 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MAQRLEQLET VLTAAAAQEA SIAHSSSDGS MALNSSDLSG WIEGMIEELT AANNVPAQRS 60 SPFTADSPYN NNTVEGSSTS LDSFLDTDSP SQVPPLHYQE ALLDNGSAVN EDEQEDNGVQ 120 LVHSLLACGE AVQHGDLVRA EETVTMGEVA AHFIEALTHR IYGGTSSSQD SSSCNVVGYE 180 SNNYLSELLH FQYYETCPYL KFSHFTSNQA ILEAFEGEKW VHVIDLNLMH GLQWPALIQA 240 LALRPGGPPS LCLTGIGPPQ AGGNNGLQEI GMKLAQLAAS VNIEFDFWGV VALKLNEVKP 300 WMLQVLPGEV VAVNSVLQLH QLLNSDGGPV LAIDEVLHSI LGLKPKIVTV VEHKANHNVS 360 GEQLLAEMYL RQEICNIIAC EGVARLGSTA LKQAKLLLSL FPGDGYQVEE NNGCLTLGWH 420 TRPLIAFSAW QCA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-39 | 109 | 430 | 7 | 378 | Protein SCARECROW |
5b3h_A | 8e-39 | 109 | 430 | 6 | 377 | Protein SCARECROW |
5b3h_D | 8e-39 | 109 | 430 | 6 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF646470 | 0.0 | EF646470.1 Sphagnum palustre DELLA protein (DELLA) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361039.1 | 1e-157 | DELLA protein GAI-like | ||||
Swissprot | Q8S4W7 | 1e-106 | GAI1_VITVI; DELLA protein GAI1 | ||||
TrEMBL | A7U4T4 | 0.0 | A7U4T4_SPHPA; DELLA protein | ||||
STRING | PP1S12_244V6.1 | 1e-153 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 1e-101 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0442s0002.1.p |