PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0434s0004.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 307aa    MW: 34071.1 Da    PI: 5.9974
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0434s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.18e-1949142199
                           EEEE-....-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3   1 ffkvl..tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                           f+kvl  ++  +++++++v+p  f++ +g++   +kt +l+ + g++W+v +   ++++++ ++ GW+ F+ +++L+ gD++vF+l+g+
  Sphfalx0434s0004.1.p  49 FVKVLvdSNLAAMATCWMVIPAAFIKLYGND--VGKTAILQGPGGQVWQVGI---GRPKWVAFKVGWRAFAADHDLEKGDILVFTLSGK 132
                           666662234456677**********999877..5679***************...9999****************************99 PP

                           SEE..EEEEE-S CS
                    B3  88 sefelvvkvfrk 99 
                           s+f   vk+f++
  Sphfalx0434s0004.1.p 133 SQF--SVKIFNN 142
                           999..9999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2242143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-2245142IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-2347141No hitNo description
SMARTSM010197.5E-1449143IPR003340B3 DNA binding domain
PfamPF023621.8E-1549142IPR003340B3 DNA binding domain
PROSITE profilePS5086312.60551143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEEGVGGGID LAASCKWCKH NYSWLGHVEH REPLSTGELQ TYPARSPSFV KVLVDSNLAA  60
MATCWMVIPA AFIKLYGNDV GKTAILQGPG GQVWQVGIGR PKWVAFKVGW RAFAADHDLE  120
KGDILVFTLS GKSQFSVKIF NNKTGTEKLS ALEARNTGIF DSRTSLVLGE KRKERDEEEM  180
ELQLHMKKLC FDIAEGGIMD ENPPVQAFES LCTSESKHVQ DSSCGKAEAL DPPGSQWNLN  240
EPYLHEPSDH LCPANDEYGE TITATQEIQL LAHDQLLQIK KKLIQMMCFN VKHCWVSFLM  300
MLLGKI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-12B3 family protein