PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0428s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | B3 | ||||||||
Protein Properties | Length: 212aa MW: 23790 Da PI: 10.0241 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52 | 1.3e-16 | 62 | 153 | 3 | 91 |
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 k l psdv+++gr+vlpkk ae++ +e++ l +ed +g++W+v+++y +++s+ ++l ++ Fv++++ +egD +++++ Sphfalx0428s0001.1.p 62 KLLQPSDVSSLGRIVLPKKEAESClpylA--VKEGMSLAMEDfDTGKTWKVRYRYwpNNRSR-MYLIENIGVFVRSHQPEEGDLLILYR 147 8899**********************743..347899*****9999*********5444444.66666********************4 PP -SS.SEE. CS B3 85 dgr.sefe 91 + ++ + Sphfalx0428s0001.1.p 148 --NvECNK 153 ..435554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.5E-25 | 58 | 159 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.03E-20 | 59 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.4E-12 | 60 | 164 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.855 | 60 | 164 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-13 | 62 | 155 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.34E-18 | 66 | 158 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MQQQPTASTA TGLAAPVAKK LLQQPVSSTA NKQQYSRNQF FINSRQKQQG PNTGTLVLLL 60 HKLLQPSDVS SLGRIVLPKK EAESCLPYLA VKEGMSLAME DFDTGKTWKV RYRYWPNNRS 120 RMYLIENIGV FVRSHQPEEG DLLILYRNVE CNKIVLYLDV LNTITGGGWS SRSSRRSAAA 180 ARRSREEEEK RREGKREGVE EVEGGTEGRS C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 1e-29 | 58 | 156 | 3 | 101 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 1e-29 | 58 | 156 | 3 | 101 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024360679.1 | 2e-40 | B3 domain-containing transcription factor ABI3-like isoform X2 | ||||
TrEMBL | Q2ABS0 | 8e-39 | Q2ABS0_PHYPA; Transcription factor ABI3-like | ||||
STRING | PP1S7_115V6.1 | 1e-39 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 8e-34 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0428s0001.1.p |