PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0402s0002.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C3H | ||||||||
Protein Properties | Length: 210aa MW: 23201.8 Da PI: 8.3951 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.5 | 3.5e-06 | 51 | 66 | 11 | 26 |
GTS--TTTTT-SS-SS CS zf-CCCH 11 rtGtCkyGdrCkFaHg 26 + G+C++Gd+C+ +Hg Sphfalx0402s0002.3.p 51 AAGICPRGDNCPQIHG 66 67*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 9.0E-7 | 92 | 170 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 1.12E-8 | 93 | 174 | No hit | No description |
PROSITE profile | PS50089 | 8.963 | 110 | 168 | IPR001841 | Zinc finger, RING-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MASAGCYATS SCMERVSNEK IACSLIAGVT RLARYAHFIS VAFVLMAVVA AAGICPRGDN 60 CPQIHGDLCP TCGKHCLHPF RPSERDNHRQ QRERNQKKLE TLRKSQDIEC SVCLERVLSK 120 PTVAERKFGL MSGRDHPFCV GCIRGWRSGS HAPGMDIDTV VRACPVCQVT SHFIVPSVVW 180 YSSSEEKEDI INGYKNKLSI CLEMEVGRR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024375822.1 | 1e-86 | E3 ubiquitin-protein ligase makorin-like isoform X2 | ||||
Swissprot | Q5ZA07 | 6e-67 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
Swissprot | Q6IDS6 | 4e-67 | C3H35_ARATH; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A2K1KL26 | 6e-84 | A0A2K1KL26_PHYPA; Uncharacterized protein | ||||
TrEMBL | A9T2C7 | 3e-84 | A9T2C7_PHYPA; Predicted protein (Fragment) | ||||
STRING | PP1S154_11V6.1 | 8e-85 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 4e-67 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0402s0002.3.p |
Publications ? help Back to Top | |||
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