PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0402s0002.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C3H | ||||||||
Protein Properties | Length: 290aa MW: 32490.7 Da PI: 7.1585 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.3 | 5.5e-08 | 24 | 44 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f++r G C+yG+rC++ H+ Sphfalx0402s0002.2.p 24 VCTFYQR-GLCSYGSRCRYEHV 44 6999999.***********997 PP | |||||||
2 | zf-CCCH | 22.6 | 1.9e-07 | 126 | 146 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C fa+ G+C++Gd+C+ +Hg Sphfalx0402s0002.2.p 126 ICA-FAAAGICPRGDNCPQIHG 146 676.*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 8.089 | 1 | 18 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.577 | 19 | 46 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-5 | 19 | 45 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-5 | 20 | 43 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 23 | 43 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.2E-6 | 24 | 44 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-5 | 118 | 145 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.418 | 121 | 148 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0011 | 122 | 147 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-5 | 126 | 146 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.93E-8 | 173 | 254 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 1.7E-6 | 185 | 248 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50089 | 8.963 | 190 | 248 | IPR001841 | Zinc finger, RING-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MHGACFKRED CMFSHSWSDQ ASQVCTFYQR GLCSYGSRCR YEHVKLSRPV SNNPLPPLPR 60 PSVVALNSSP DTSRAEESSS NTRTQSAWQL TEGKANLGPR FLEEDDEKDV EEIDMPTSND 120 PSEIPICAFA AAGICPRGDN CPQIHGDLCP TCGKHCLHPF RPSERDNHRQ QRERNQKKLE 180 TLRKSQDIEC SVCLERVLSK PTVAERKFGL MSGRDHPFCV GCIRGWRSGS HAPGMDIDTV 240 VRACPVCQVT SHFIVPSVVW YSSSEEKEDI INGYKNKLSI CLEMEVGRR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024375822.1 | 1e-129 | E3 ubiquitin-protein ligase makorin-like isoform X2 | ||||
Swissprot | Q5ZA07 | 1e-95 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A2K1KL26 | 1e-127 | A0A2K1KL26_PHYPA; Uncharacterized protein | ||||
STRING | PP1S154_11V6.1 | 1e-128 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 2e-90 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0402s0002.2.p |
Publications ? help Back to Top | |||
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