PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0402s0002.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 353aa    MW: 39581.7 Da    PI: 7.4872
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0402s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97e-082444526
                          --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                           C f++r G C+yG+rC++ H+
  Sphfalx0402s0002.1.p 24 VCTFYQR-GLCSYGSRCRYEHV 44
                          6999999.***********997 PP
2zf-CCCH22.22.4e-07126146526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C  fa+ G+C++Gd+C+ +Hg
  Sphfalx0402s0002.1.p 126 ICA-FAAAGICPRGDNCPQIHG 146
                           666.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.089118IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-51945IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5771946IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-52043IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-42343IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-52444IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-5118145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.418121148IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011122147IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-5126146IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.83E-8174254No hitNo description
Gene3DG3DSA:3.30.40.102.3E-6185248IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500898.963190248IPR001841Zinc finger, RING-type
SMARTSM003561.7287313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.329290314IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MHGACFKRED CMFSHSWSDQ ASQVCTFYQR GLCSYGSRCR YEHVKLSRPV SNNPLPPLPR  60
PSVVALNSSP DTSRAEESSS NTRTQSAWQL TEGKANLGPR FLEEDDEKDV EEIDMPTSND  120
PSEIPICAFA AAGICPRGDN CPQIHGDLCP TCGKHCLHPF RPSERDNHRQ QRERNQKKLE  180
TLRKSQDIEC SVCLERVLSK PTVAERKFGL MSGRDHPFCV GCIRGWRSGS HAPGMDIDTV  240
VRACPVCQVT SHFIVPSVVW YSSSEEKEDI INGYKNKLRW RCICVCGDID CKYFDYGNGT  300
CPFGTSCFYK HMFGDGSREE VKLRHLGAAD GNTVIAKNVR LSDFLDRLVN AR*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375821.11e-167E3 ubiquitin-protein ligase makorin-like isoform X1
SwissprotQ5ZA071e-130C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A2K1KL261e-166A0A2K1KL26_PHYPA; Uncharacterized protein
STRINGPP1S154_11V6.11e-166(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-120C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]