PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0381s0004.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 445aa    MW: 48281.9 Da    PI: 4.8563
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0381s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.86.9e-17112165356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k++++t +q++ Le+ F  ++++  e++ +LAk+lgL+ rqV vWFqNrRa+ k
  Sphfalx0381s0004.1.p 112 KKRRLTFDQVRSLERNFGLENKLEPERKLQLAKELGLQPRQVAVWFQNRRARCK 165
                           45578999********************************************98 PP
2HD-ZIP_I/II112.72.4e-36111202192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl+ +qv++LE++F  e+kLeperK +la+eLglqprqvavWFqnrRAR ktkqlE+dye+L   y++lk+e +++ +e++eL++
  Sphfalx0381s0004.1.p 111 EKKRRLTFDQVRSLERNFGLENKLEPERKLQLAKELGLQPRQVAVWFQNRRARCKTKQLERDYEVLILDYNRLKSELQAVIEEKKELKA 199
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  90 elk 92 
                           +++
  Sphfalx0381s0004.1.p 200 KMQ 202
                           986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.1E-18101169IPR009057Homeodomain-like
PROSITE profilePS5007116.698107167IPR001356Homeobox domain
SMARTSM003891.1E-13110171IPR001356Homeobox domain
PfamPF000462.7E-14112165IPR001356Homeobox domain
CDDcd000861.90E-14112168No hitNo description
Gene3DG3DSA:1.10.10.601.6E-17114174IPR009057Homeodomain-like
PRINTSPR000311.3E-5138147IPR000047Helix-turn-helix motif
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5147163IPR000047Helix-turn-helix motif
PfamPF021832.9E-10167207IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MTNCNIGSLA AAHANFGAAT PNLMIMQRSQ SCNSRDTLVA MLASCSPAAV AQLQASRSTG  60
SLEDAVMGCG QKRGAESSFY PASAYEAAAS VIDEAGDDLY GGGDECVQNV EKKRRLTFDQ  120
VRSLERNFGL ENKLEPERKL QLAKELGLQP RQVAVWFQNR RARCKTKQLE RDYEVLILDY  180
NRLKSELQAV IEEKKELKAK MQWLTGKAHS EEEYSGCEAA AAAAAEEDVS CKVVQQQGST  240
TQAWPHPAPG SNNPAALVKP EKLQLEFCNS TRDVNQLLPR SSTFVMADQA PPPRRRKDGS  300
PISSASCTSS EILDADSPRT IDSGLNSSSL QTQLEGQCKP VAYPALQIIR SADTLLDQSA  360
NAVMDLTESD DVYGRVFSPQ PYINPRSINN LRDDHAAAAA AAAAATMSPS CCFQDQDSSS  420
TYLSATQVEE HGALSWWDWP FANI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159167RRARCKTKQ
2292296PRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.17e-35homeobox protein 16