PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0365s0001.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 416aa    MW: 46089.1 Da    PI: 7.2121
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0365s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.8e-18130220199
                           EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                           f+k +++s++ +  +l lp +f+++h  +k   +  ++lede+ r+We  +    ++  + l++GW++F  +++L +gD ++F+l++++
  Sphfalx0365s0001.1.p 130 FVKPMLHSHTASGFWLGLPATFCKTHlPLK---DDRIMLEDEQDREWETIY--LAGK--VGLSGGWRGFSLDHDLVDGDCCIFELVSSH 211
                           89************************7444...346***************..5555..66************************9878 PP

                           EE..EEEEE-S CS
                    B3  89 efelvvkvfrk 99 
                           +f  +v++fr+
  Sphfalx0365s0001.1.p 212 RF--KVHIFRA 220
                           88..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-22127220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-24127221IPR015300DNA-binding pseudobarrel domain
CDDcd100173.30E-27128219No hitNo description
SMARTSM010191.1E-21130221IPR003340B3 DNA binding domain
PfamPF023621.8E-15130220IPR003340B3 DNA binding domain
PROSITE profilePS5086313.662130221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGVVEEDSPV GYEEIRRKRI EENMKRMKEL GLVELSRSLA PVKSCTPTKT VRRKMASSQD  60
LGTEARRSSR VANKPPVDYR DQTDVSGLRA RCGTRSDRQG LPRKYMSDKA RMAAIDAADE  120
VNKGLVNPAF VKPMLHSHTA SGFWLGLPAT FCKTHLPLKD DRIMLEDEQD REWETIYLAG  180
KVGLSGGWRG FSLDHDLVDG DCCIFELVSS HRFKVHIFRA HELEFVDDDE EGEGKVQDGD  240
DVKGNKSSNA NKTSAAKAVG SKSAKKFTPK SPKLEDEADG EEATEKPTKL SSSTRPKKKG  300
KAKDATRSLS ANRRSRRISG SEDDEDQEDT DEEGANEEDS DGGAPSTPSQ KVKGERKNPL  360
SRKRKSKVIT LGSEDSEEDD DDDDDKWEPT ASTRRSTHSR ACRTPVRTTR NSGAR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360365SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400952.11e-88B3 domain-containing protein Os06g0194400-like
TrEMBLA0A2K1L0E72e-87A0A2K1L0E7_PHYPA; Uncharacterized protein
STRINGPP1S7_383V6.14e-88(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-51B3 family protein