PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0323s0004.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 1079aa    MW: 116651 Da    PI: 8.1902
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0323s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94e-09484506326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           +++C +f+r G C++G++C+F H+
  Sphfalx0323s0004.1.p 484 QPICIDFSR-GRCQRGSSCRFLHS 506
                           589******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1099051.11E-1237112IPR000061SWAP/Surp
SMARTSM006481.0E-458117IPR000061SWAP/Surp
PROSITE profilePS5012810.60560102IPR000061SWAP/Surp
PfamPF018052.5E-861111IPR000061SWAP/Surp
PROSITE profilePS5010315.15481508IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-4482507IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6485506IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5486507IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1079 aa     Download sequence    Send to blast
MRTASNPSLP PFPTHGGGNL GPNLPGPYPA LPASLSLTPA ADDFPMDPPA MPRDAEMLKN  60
IDVLSSFVVK NGPDFEQLAR KKQSADPKFA FLFGGEPDTD AAIGQRYYEW KKHALEASLW  120
SQGGSSLCSG RGSIQDEVKL TSDALASPVG SDMEMEDDFD APPSAVEKDV ASPVQVIEAK  180
VFPVIEVNEW EEAVSVSEGR NFRAVAPGAK QPDTGSGPKE DIPPASGRRR DTRRRTGFDR  240
SCMEDISPRR KSASPPEQAL PNGRERVSHQ ERKLSSGVNG HQTEGAPRGS WRGPPEPSLT  300
PEAPKLDMAS SPKVLQKSEV REKLEAVRTP NADVVDLPEF DGRTDAKGIQ DPKKVKHDRI  360
SSGLELGAPT VDEFGRLVRH DSSDSDGEDG HHGKKRRRST SWSRSRSQSP REKLRQRHSR  420
SHSRSRRSRR SRSRSYSSRQ HQSYSRSPPR DSRRGADSSW GSDRRFQDRG ARRGGRVEWG  480
GGTQPICIDF SRGRCQRGSS CRFLHSDNSS NVASSGDTGR GGGRYGSRGG QGSRGENKDD  540
GRTWGSARSS SGRADEGSRA RKNWDSTTER EKEDTEETVL EDRGGCKPEE SPTSAYGDDQ  600
SAKLIKTETK EKSESTTMAS KPSSFTDPPP LARLPTSALF ALPHSSSFDP DVVNSSIVTL  660
PPQAPAISVS QAFSSVPSAQ PEPAFATDVP EKDYTTNTSM MQPGFDGSIP PPPPMVGFMG  720
HHHPSSQLQA PYPAPTPQAT AYSQSGGHPQ PGGFPQMGLQ QLPVPSRPGL PWPTSYVINQ  780
AMQGYGLPGP ASSLAQQSIP QHVSQHLGVS VSKEQYGPLI ANAFEPEPPG ARVVGPNPEF  840
GGPPDMSMVI MESVSPGLPS HHHPVTNSVN QGTHNGLVME SVNATTDVPS GEQQSHSVME  900
LLPSHPAVEV STYRSLQSQP QGGGVLENVS PALDENHNWN SGLFPSERDS GQTQDIKDRG  960
GNQSQVAGQN EKEGRSRAGR GKEGRDKEGG EKEGHGLTLV RAAVTEYVKD VLKPTWREGH  1020
MSKEAFKTIA KKAVDKVLGA LQPHQIPKTP EKVDNYMASS RPKIHKLVQG YVDKYVKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1473481GGRVEWGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.19e-19C3H family protein