PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0288s0016.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 357aa    MW: 39854.1 Da    PI: 6.9542
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0288s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.1e-083656526
                          --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                           C f++r G C+yG+rC++ H+
  Sphfalx0288s0016.1.p 36 VCTFYQR-GLCSYGSRCRYEHV 56
                          6999999.***********997 PP
2zf-CCCH22.22.5e-07138158526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C  fa+ G+C++Gd+C+ +Hg
  Sphfalx0288s0016.1.p 138 ICA-FAAAGICPRGDNCPQIHG 158
                           666.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.577330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-7428IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-6429IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-4831IPR000571Zinc finger, CCCH-type
PfamPF146082.1E-4927No hitNo description
PROSITE profilePS5010314.5773158IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-53157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-53255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-43555IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-53656IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-5130157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.418133160IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011134159IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-5138158IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.15E-11190266No hitNo description
Gene3DG3DSA:3.30.40.106.5E-9197260IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00623201260No hitNo description
PfamPF000978.4E-5202259IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008911.53202260IPR001841Zinc finger, RING-type
SMARTSM001846.7E-6202259IPR001841Zinc finger, RING-type
PROSITE patternPS005180226235IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010312.267289318IPR000571Zinc finger, CCCH-type
SMARTSM003560.55289317IPR000571Zinc finger, CCCH-type
PfamPF146082.5294315No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEGRSRVLCK FFMHGACLKG EDCMFSHSWS DQASQVCTFY QRGLCSYGSR CRYEHVKLSR  60
PVSNNPLPPL PRPSVVALNS SPDTSRAEES SSNTHTQSAW QLTEGKANLG PRFLEEDDEK  120
DVEEIEMPTS NDPSEIPICA FAAAGICPRG DNCPQIHGDL CPTCGKHCLH PFRPSECDNH  180
RQQCERNHKK LEALRKSQEI ECSVCLERVL SKPTVAERKF GLMSGCDHPF CVGCIRGWRS  240
GSHAPGMDID TVVRACPVCR VASHFIVPSV VWYSSSEEKE DIINGYKNKL SDIDCKYFDY  300
GNGTCPFGTS CFYKHMFRDG SREEVKLRHL GAADGNTVIA KNVRLSDFLD RLDIAR*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375821.10.0E3 ubiquitin-protein ligase makorin-like isoform X1
SwissprotQ5ZA071e-146C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A2K1KL260.0A0A2K1KL26_PHYPA; Uncharacterized protein
STRINGPP1S154_11V6.11e-174(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-131C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]