PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0274s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | VOZ | ||||||||
Protein Properties | Length: 409aa MW: 45133 Da PI: 6.3553 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 340.6 | 7.9e-105 | 114 | 342 | 4 | 217 |
VOZ 4 saflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwna 92 afl+pkcalwdc+rpa+g+++ ycssfh++lal eg+pg+ pvlrp+gidlkdg+lf+al+a+v+g+ vgipe +gaat+k+pwna Sphfalx0274s0004.1.p 114 QAFLNPKCALWDCPRPARGVNEGLVYCSSFHEELALSEGAPGMCPVLRPGGIDLKDGPLFSALKARVNGQAVGIPELHGAATSKTPWNA 202 69**************************************************************************************9 PP VOZ 93 .............aelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewh 168 a+lfd+++l+ge +rewlffdkprrafesg rkqrslpdy grgwhesrkqvmkefgglkrsyymdpqp + fewh Sphfalx0274s0004.1.p 203 tvcklgmdcdygnADLFDVAVLHGEVLREWLFFDKPRRAFESGTRKQRSLPDYGGRGWHESRKQVMKEFGGLKRSYYMDPQPEGPFEWH 291 444444444444458************************************************************************** PP VOZ 169 lyeyeineldalalyrlelklvde.kksakgkvskd.sladlqkklgrlta 217 l+eye+++ ++alyrlelk+vd+ kks k+k ++d s+a lq+++grl+a Sphfalx0274s0004.1.p 292 LFEYELSSRTDCALYRLELKQVDAfKKSGKAKAQTDtSVASLQHQIGRLSA 342 **********************976999****8776489**********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MVSELQQARR DNRVKDIALL EEQMHQMLRE WKAELREASP ASSLLSLQAE PSSSELSSDM 60 ERLLQLNDED DDASSIARIP SPLVHHQPLE AAGTPTSQKD GGVMVPELYG IPLQAFLNPK 120 CALWDCPRPA RGVNEGLVYC SSFHEELALS EGAPGMCPVL RPGGIDLKDG PLFSALKARV 180 NGQAVGIPEL HGAATSKTPW NATVCKLGMD CDYGNADLFD VAVLHGEVLR EWLFFDKPRR 240 AFESGTRKQR SLPDYGGRGW HESRKQVMKE FGGLKRSYYM DPQPEGPFEW HLFEYELSSR 300 TDCALYRLEL KQVDAFKKSG KAKAQTDTSV ASLQHQIGRL SADLSQVEGQ SMQLPSPADS 360 RDSCRGKTKL NQKKTITKSV GSGQLVNVAF NLSSRDVMPF NHTGDCTQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024378749.1 | 0.0 | transcription factor VOZ1-like isoform X1 | ||||
Swissprot | Q9SGQ0 | 1e-120 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A2K1KF99 | 0.0 | A0A2K1KF99_PHYPA; Uncharacterized protein | ||||
STRING | PP1S113_68V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-112 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0274s0004.1.p |
Publications ? help Back to Top | |||
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