PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0273s0017.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 321aa    MW: 35149.8 Da    PI: 9.423
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0273s0017.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11e-151492281298
                           HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                            s+ +++p +f+++hg++   + + +l+de+g +Wev +  +++s +  l++GWk+F++ + + +gD + F+l+ +s f   v++++
  Sphfalx0273s0017.2.p 149 HSSGIWIPLEFMKDHGHQ--IGNEAVLQDEHGMTWEVSV--SRGS-WSGLRAGWKKFADNHTMAVGDKIEFTLIADSVF--AVRIIS 228
                           45679**********988..7789***************..6666.678*************************99999..888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-18133229IPR015300DNA-binding pseudobarrel domain
CDDcd100174.93E-17134228No hitNo description
SuperFamilySSF1019369.42E-18134226IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.1E-12136230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.562138230IPR003340B3 DNA binding domain
PfamPF023624.5E-13149228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MVTRAGGSFA AVPAMVDASV KRGASEEKTR ISNLMDAVMT ASGGRTRISV LMDAVMKASE  60
ADDADVFSEE CCISHVLSSD AKKNLERSKK KVYSEGSLVP NEKSIMAKVR VQQNCKAQEI  120
QQQQQQLIQS LCPPTFTKTV LAGSLAASHS SGIWIPLEFM KDHGHQIGNE AVLQDEHGMT  180
WEVSVSRGSW SGLRAGWKKF ADNHTMAVGD KIEFTLIADS VFAVRIISET NQKPISHISR  240
LCKDSHETVY KGISRKRSVR YVSSRSSHGS ALEDEAESHN HQFHAGIVIG TSSNSCKRAR  300
SKRCWNYKQY SKEGSQAGIK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-07B3 family protein