PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0273s0003.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

HRT-like

Protein Properties

Length: 569aa MW: 61427.6 Da PI: 10.6214

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0273s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	38.9	1.5e-12	365	393	2	30
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 CG+ l++G +C++ P kgRKRC HK+ + Sphfalx0273s0003.1.p 365 CGFVLDNGVPCSAIPSKGRKRCTMHKDTK 393 **************************966 PP

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence Send to blast
MGLVSMSFNP SNDAVGAKAM SNHAGCPGHD TAPRWKREDY VHVKHDKLFS DWKVLVGPSD 60 WRDHAAGKEG VQRYRVQNLP GSHCGPGVYE LEVTGPAWLP VQQDQAGLGS NKLRSKEVVA 120 VFVGQSDNVR QRLQRYGQAG GHLEGAKSTR LFVANKNDAT VTSSSWKNEL QYGVSDQEPV 180 ARRSSRSGGE PMSPEHSSGS RSPRSPRLFT EVFALGCSVA FRWAATDSKA VAEKVEEELL 240 EALDYAWNKA ADGTRRSRDV LAKILVGVSS SSETSSSMGD SSLPKKWLCF GVKRVGIQVA 300 VRKPSRTVHD DAQSAIANYS RRKTRGDGSM LWTRAHPNAL TVGLGTKAAK VSEFTKLEIP 360 AVVRCGFVLD NGVPCSAIPS KGRKRCTMHK DTKTTRNHRR SQAQVASTSP SHSCHPNLSS 420 SRSSTTDFRG HTAHGNSSSR AAAVARSSSS KSHGALACCL PFVGHDNKSS QHSAAASSAA 480 GKQPPEVKRR GSLSFNTWLR TSELRRSQMS GAEWTMTEHA NQLKLASSRT RSSQTSVSGG 540 KRSSSKCSSY TSSLPTCKES ETTRAKWS*

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence Send to blast

MGLVSMSFNP SNDAVGAKAM SNHAGCPGHD TAPRWKREDY VHVKHDKLFS DWKVLVGPSD  60
WRDHAAGKEG VQRYRVQNLP GSHCGPGVYE LEVTGPAWLP VQQDQAGLGS NKLRSKEVVA  120
VFVGQSDNVR QRLQRYGQAG GHLEGAKSTR LFVANKNDAT VTSSSWKNEL QYGVSDQEPV  180
ARRSSRSGGE PMSPEHSSGS RSPRSPRLFT EVFALGCSVA FRWAATDSKA VAEKVEEELL  240
EALDYAWNKA ADGTRRSRDV LAKILVGVSS SSETSSSMGD SSLPKKWLCF GVKRVGIQVA  300
VRKPSRTVHD DAQSAIANYS RRKTRGDGSM LWTRAHPNAL TVGLGTKAAK VSEFTKLEIP  360
AVVRCGFVLD NGVPCSAIPS KGRKRCTMHK DTKTTRNHRR SQAQVASTSP SHSCHPNLSS  420
SRSSTTDFRG HTAHGNSSSR AAAVARSSSS KSHGALACCL PFVGHDNKSS QHSAAASSAA  480
GKQPPEVKRR GSLSFNTWLR TSELRRSQMS GAEWTMTEHA NQLKLASSRT RSSQTSVSGG  540
KRSSSKCSSY TSSLPTCKES ETTRAKWS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	5e-41	effector of transcription2

Link Out ? help Back to Top
Phytozome	Sphfalx0273s0003.1.p