PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0253s0015.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

WRKY

Protein Properties

Length: 702aa MW: 76509.4 Da PI: 6.1351

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0253s0015.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	69.7	4e-22	371	428	3	58
-SS-.EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 3 Dgyn.WrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 Dg++ WrKYG K++++s f r+YY+C+ + +C++kk v+ ++dp+++e+tY g+H++ Sphfalx0253s0015.1.p 371 DGHQgWRKYGNKPIQNSSFCRGYYKCSVSgECNAKKMVQPMEKDPSIFEVTYVGQHTC 428 55544**********************9************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-22	365	429	IPR003657	WRKY domain
SuperFamily	SSF118290	4.71E-20	366	429	IPR003657	WRKY domain
SMART	SM00774	1.8E-23	369	430	IPR003657	WRKY domain
Pfam	PF03106	2.5E-20	371	428	IPR003657	WRKY domain
PROSITE profile	PS50811	16.673	376	431	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MNWTSSAECV EKVEEMLNRA IIQQEDLWRM LFLQSPPAPG HDDQEDAAAA PVLSSAIVIE 60 QRHGRVKYDD VIPPIVHGAL KGKLHNSMDW CHLAVSRLNE ILSRIQAPEP TCPPLVSGSP 120 PARFLECETE LPESQIVKTL ISKSELHTRP LSPIQAAHVL PLKDKLEDLS SLPHPLTSKR 180 QQFSSCSFEA GRSSAVLSIA ATASDSPSSY LNLAHTPIPS GVDPAAVSEP GSMRLLELMD 240 SDPWPTELAW ISQLITPEDS VAADYSRQIA TSVCQPDHAP APYNVSAGTD AAAANTNLAA 300 PCIKTDISEI VPKASIDSIN GHHQITPSSR SPIRQKRHRD PAKAEAEKKS EIQYQRLQPG 360 VKIRTRSIPC DGHQGWRKYG NKPIQNSSFC RGYYKCSVSG ECNAKKMVQP MEKDPSIFEV 420 TYVGQHTCGS SMIMSSNSNY RRRRNPRSSQ QKSNKTSVLA TATTTETPTT PAVISTAITS 480 DRLQVHQDAV ISPSTNSPIE AVLSKKHLML ISATENAVVS KPPHQKLQLQ APAVSQETAV 540 AVAGGSDLES SSLQEGWTSG STDHSRSKSG SDADEESRPE TDRKSEEGNG GNAVASVTDY 600 HYLQNNQLSF FNFPAAAAAD FSSTLASSPL SWTHEYDDFL LQQLSSNDNI HPDQLHFADH 660 VNLLQEEQQH QQLITSSTTT QQQQQFNAIV STLLYGSFLE P*

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MNWTSSAECV EKVEEMLNRA IIQQEDLWRM LFLQSPPAPG HDDQEDAAAA PVLSSAIVIE  60
QRHGRVKYDD VIPPIVHGAL KGKLHNSMDW CHLAVSRLNE ILSRIQAPEP TCPPLVSGSP  120
PARFLECETE LPESQIVKTL ISKSELHTRP LSPIQAAHVL PLKDKLEDLS SLPHPLTSKR  180
QQFSSCSFEA GRSSAVLSIA ATASDSPSSY LNLAHTPIPS GVDPAAVSEP GSMRLLELMD  240
SDPWPTELAW ISQLITPEDS VAADYSRQIA TSVCQPDHAP APYNVSAGTD AAAANTNLAA  300
PCIKTDISEI VPKASIDSIN GHHQITPSSR SPIRQKRHRD PAKAEAEKKS EIQYQRLQPG  360
VKIRTRSIPC DGHQGWRKYG NKPIQNSSFC RGYYKCSVSG ECNAKKMVQP MEKDPSIFEV  420
TYVGQHTCGS SMIMSSNSNY RRRRNPRSSQ QKSNKTSVLA TATTTETPTT PAVISTAITS  480
DRLQVHQDAV ISPSTNSPIE AVLSKKHLML ISATENAVVS KPPHQKLQLQ APAVSQETAV  540
AVAGGSDLES SSLQEGWTSG STDHSRSKSG SDADEESRPE TDRKSEEGNG GNAVASVTDY  600
HYLQNNQLSF FNFPAAAAAD FSSTLASSPL SWTHEYDDFL LQQLSSNDNI HPDQLHFADH  660
VNLLQEEQQH QQLITSSTTT QQQQQFNAIV STLLYGSFLE P*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	7e-14	WRKY DNA-binding protein 55

Link Out ? help Back to Top
Phytozome	Sphfalx0253s0015.1.p