PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0250s0012.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 739aa    MW: 78596 Da    PI: 7.4007
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0250s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-172269148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT+eEde+l+ +v  +G+g+W+++ r+ g+ R++k+c++rw +yl
  Sphfalx0250s0012.1.p 22 RGAWTAEEDEKLLAYVGSHGTGHWRSVGRKAGLQRCGKSCRLRWTNYL 69
                          89********************************************97 PP
2Myb_DNA-binding54.33e-1776118246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g++T++E++l+v+++  lG++ W++Ia++m+ gRt++++k++w++
  Sphfalx0250s0012.1.p  76 GSFTPDEEDLIVKLHSSLGSR-WSLIAAKMP-GRTDNDIKNHWNT 118
                           78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.0431769IPR017930Myb domain
SuperFamilySSF466891.35E-2920116IPR009057Homeodomain-like
SMARTSM007172.6E-132171IPR001005SANT/Myb domain
PfamPF002495.7E-152269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-222376IPR009057Homeodomain-like
CDDcd001679.63E-112469No hitNo description
PROSITE profilePS5129426.8370124IPR017930Myb domain
SMARTSM007172.9E-1574122IPR001005SANT/Myb domain
PfamPF002492.1E-1576118IPR001005SANT/Myb domain
CDDcd001671.97E-1177120No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2477124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MSTRVALAAA AAAAAAGDDL RRGAWTAEED EKLLAYVGSH GTGHWRSVGR KAGLQRCGKS  60
CRLRWTNYLR PNIRHGSFTP DEEDLIVKLH SSLGSRWSLI AAKMPGRTDN DIKNHWNTRL  120
KKKLCNMGID PVTHKPISEL LRDIAAVEDA RATGGASAAA GLGNPMVAGE EARRCFSDNL  180
LRKAVRDYTR TSSTAAAAAG PSKYDSLSCA AATDHVFNLD HQSCSDHQHL GGQTADHCDV  240
SAMAHSSIIQ NEAAAEDDLH SSWEHSITST TRSNCSMQAG GQDNNSCCSD QVDAAVELSS  300
CCRSSCSRSP AASDRGTTFQ SLQQVMNSSP PSRSCKNNNI MQHQSSSSSF QSAAAVICMQ  360
QAAAACEEPA IGCRRNNFNL VTDQCLAADT SYCNPATSSF HQQLSAATAA SDRTSSTSSN  420
SLVSACSRPA ALHFLPMQQD HHHAAAHLPA AAAACSSSWP CSTIMNGTAC TSCCSASYLD  480
HQQAAIPSST NMKLQQLPPT SSMRFSTVEQ PDLQLLQMRR LQQQQPTGLA NFNYHPAAAE  540
AAATAASVTA PAPRFSHSIL QQQQQEEDFK RPQSSLHQQL MQQQDHHRHD HHHRQLDQVV  600
SSSSAARRQY NQSPAASFNL QQASAAGSQE AAVAAAPYLS LREPLSPVAA AAYNNTDLAA  660
VTPGAPQLLL SSFAARPPAA AAAPLSSFNG PAAALISSFS SSTAGPVTHV APSTGIRTAH  720
SHHYDPQSPR MVLWDFQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28191244108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.12e-55myb domain protein 103