PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0247s0010.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

MYB_related

Protein Properties

Length: 1069aa MW: 114333 Da PI: 6.511

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0247s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.1	5.5e-15	65	109	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Sphfalx0247s0010.1.p 65 RERWTGEEHQKFLEALKLYGRA-WRRIEEHIG-TKTAVQIRSHAQKF 109 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.88E-16	59	115	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.113	60	114	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-8	62	111	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-15	63	112	IPR006447	Myb domain, plants
SMART	SM00717	1.3E-12	64	112	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-12	65	108	IPR001005	SANT/Myb domain
CDD	cd00167	3.98E-9	67	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0010600	Biological Process	regulation of auxin biosynthetic process
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1069 aa Download sequence Send to blast
MIIMTPNSAG SGEQHQTGGG GGGAGSEGSF QWSSAAPVGS TGTPIQDDAL EGTKVRKPYT 60 ITKQRERWTG EEHQKFLEAL KLYGRAWRRI EEHIGTKTAV QIRSHAQKFF SKVERDQTVP 120 PGGGVVGMDT GGMVQPLIDI PPPRPKRKPS HPYPRKAKGN NNNVLKHSTE DDTPIPSSSS 180 GSLATARPAE DGLVKSSTRQ EDDVTEVHNK ESSPDAHPIE EISGEEKLTA VGPPIRVLSD 240 PSSWVPFPAF HHYPQWGNYF PNQHIPNCNQ QPGGSYGNFE KMAQLAALFM SRGLMLPWHP 300 SQVTLTSSCG PQDRSAVPET LSAMPGFWPA IDSGTTTITA SGIPEFGSHN SFRGTSSVPE 360 DEAAKAAMAA AASAWWALQN GGASPLSLAA MRALYNPGMA TMPSPFLFSQ GKLIQHDAAK 420 LQGPEPEGEV APIHTQQAPP EDSSQELVVH SGGHRLVRSD AVQMAERAMQ VKEVKAKRED 480 VVTGSCGGSS DVCMPSSWGG GSCLKPGNGG GQSKECGQRV ELVNLSRESI ICRSPSNVGS 540 PPTKLHKLKS QLSGLVQKEL SSEHARSSKD EGDEVGYENW KHLRDEAFSG FSMVPVVTCS 600 SSKLGVCVPP AAALQLLKSR DSSSGSGCFA ALYTNEAPDQ KSSEEEHTPV LQTCSDGEAS 660 GSDVGMLAEN GSGEGGGGPS SNSSACGNLP ERNGHLGSSE GSSDVEAPSN VPSNFRGETN 720 EQSSSEAEMV ETKADEAQVG FRCFSHEDFT SSRKDSEKHH PQERTFRLLP RSLSSEGEQQ 780 KEATLGRSQV AFQALFARET LPRTFSPPPR DSLATCRAPT RDSGFVNQQA LSLCLQSRIS 840 HSKPLSSVSL PADEGLPFRP HKTCVADQDS AFNAWQPYKA SKGVGIRIDK CEGSSITTTS 900 SGAQVPQQHP EEHHSPKRTK DIKRKERYGE GAMTINWLTL GTESSSGLEL VKEDSEDTTD 960 FKSQHESLHM ETSTPHVDFF PQLKKKKFIA SSNKVDDVGG GSSLLTMLPL SCSEPSSGKT 1020 QTHMFSLSIA TTTSGSDLST VSSTRSVKYS GLGFVPYQRA SLESSLKL*

Sequence ? help Back to Top

Protein Sequence Length: 1069 aa Download sequence Send to blast

MIIMTPNSAG SGEQHQTGGG GGGAGSEGSF QWSSAAPVGS TGTPIQDDAL EGTKVRKPYT  60
ITKQRERWTG EEHQKFLEAL KLYGRAWRRI EEHIGTKTAV QIRSHAQKFF SKVERDQTVP  120
PGGGVVGMDT GGMVQPLIDI PPPRPKRKPS HPYPRKAKGN NNNVLKHSTE DDTPIPSSSS  180
GSLATARPAE DGLVKSSTRQ EDDVTEVHNK ESSPDAHPIE EISGEEKLTA VGPPIRVLSD  240
PSSWVPFPAF HHYPQWGNYF PNQHIPNCNQ QPGGSYGNFE KMAQLAALFM SRGLMLPWHP  300
SQVTLTSSCG PQDRSAVPET LSAMPGFWPA IDSGTTTITA SGIPEFGSHN SFRGTSSVPE  360
DEAAKAAMAA AASAWWALQN GGASPLSLAA MRALYNPGMA TMPSPFLFSQ GKLIQHDAAK  420
LQGPEPEGEV APIHTQQAPP EDSSQELVVH SGGHRLVRSD AVQMAERAMQ VKEVKAKRED  480
VVTGSCGGSS DVCMPSSWGG GSCLKPGNGG GQSKECGQRV ELVNLSRESI ICRSPSNVGS  540
PPTKLHKLKS QLSGLVQKEL SSEHARSSKD EGDEVGYENW KHLRDEAFSG FSMVPVVTCS  600
SSKLGVCVPP AAALQLLKSR DSSSGSGCFA ALYTNEAPDQ KSSEEEHTPV LQTCSDGEAS  660
GSDVGMLAEN GSGEGGGGPS SNSSACGNLP ERNGHLGSSE GSSDVEAPSN VPSNFRGETN  720
EQSSSEAEMV ETKADEAQVG FRCFSHEDFT SSRKDSEKHH PQERTFRLLP RSLSSEGEQQ  780
KEATLGRSQV AFQALFARET LPRTFSPPPR DSLATCRAPT RDSGFVNQQA LSLCLQSRIS  840
HSKPLSSVSL PADEGLPFRP HKTCVADQDS AFNAWQPYKA SKGVGIRIDK CEGSSITTTS  900
SGAQVPQQHP EEHHSPKRTK DIKRKERYGE GAMTINWLTL GTESSSGLEL VKEDSEDTTD  960
FKSQHESLHM ETSTPHVDFF PQLKKKKFIA SSNKVDDVGG GSSLLTMLPL SCSEPSSGKT  1020
QTHMFSLSIA TTTSGSDLST VSSTRSVKYS GLGFVPYQRA SLESSLKL*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00515	DAP	Transfer from AT5G17300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	3e-32	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0247s0010.1.p