PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0226s0029.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 770aa    MW: 79569.9 Da    PI: 7.9957
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0226s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.4e-07653694854
                           HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           + r RR+ri +++  L+ l+P+       K++ +++LekA++Y++ L
  Sphfalx0226s0029.1.p 653 AARVRRERISERLKYLQALIPNG-----DKVDMVTMLEKAINYVQCL 694
                           6799******************5.....5***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.65E-8642699No hitNo description
PROSITE profilePS5088813.579645694IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-12649708IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-10650704IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-8651700IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-5653694IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MEDVGLWQAY EAQASLQQQA AALMYNNVGP HHPDHNNHIA SVADHGGCVP QSPAFLPCWN  60
DSSSSSCRSW LDAAARSANE INDMSMLMCT PSSLHLVDTG VSLNHHQRRR RRRHPSRLIQ  120
QHQQLDQSSS SSLPELSNML CQSAAADGLW GGSHNSSSSS SSLATELYGT GPAAAAASAM  180
HKLMQVAECC YSHNSTVQGP ATESMSMAAA SNCALQQSPG YCNNTLQASS AHGLKPNGES  240
AAAAAAAAAS SYGAAAAYSM QRDKKISALQ APVAAAGTSC RKAVDRSSSH SFSTVPGGMY  300
ATGGGGGTGG RDCRLEGTNL LHPQQQQLLQ LPIVPGGGGI TGVMNSPACG SSSAASLGGF  360
SPSGNGGVAA ATNVAQQEIQ RRVTGIAATT AAGGMKSMAS FNPGPYVSSA AAGERQDSAL  420
AAHRVWLENK GGSSSAPTTD FNAAQQLACG SAVQRIAGSK QQQQQQQQPG GIKSGGGAAT  480
QVPGIEWSSR MSPASAAAAV AVGAVQQLGG SRVHTGLQGP VDEKTTSIVL MQQPETAATT  540
TTTLKCALPR CPPAASSGNT AFTNPRKRSI LQGDSFQGIF QDSGKKSAAA GGMLWSGQDH  600
GCSRLEYLST AAHKQVSQST ATSGSSRALG PALNTNLKPR ARQGSANDPQ SIAARVRRER  660
ISERLKYLQA LIPNGDKVDM VTMLEKAINY VQCLELQIQM LKDDSLWPKA LGALPNTIQE  720
LLELAGPEFS GAAAVAQSMK PDVVEECKPK PSVELMEEDP TNPPPPLIL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112QRRRRRR
2107112RRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.13e-25ROOT HAIR DEFECTIVE 6-LIKE 2