PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0201s0027.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 202aa    MW: 23241.6 Da    PI: 7.5009
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0201s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.5e-13501421497
                           T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE......EEETTE.........EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3  14 grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliy....rkksgr.........yvltkGWkeFvkangLkegDfvvFkldgr 87 
                            +l +p  f+e + + k e + +++le  esg  W+v +      +    +           l++GWk+F+ +n+L++gD+++F+l++ 
  Sphfalx0201s0027.1.p  50 YQLDIPSYFLEYCaSRKWELKEKMVLEGdESGMLWKVMMVLrrykE----KrrankvrvrASLARGWKDFALQNKLNTGDSLLFTLVRL 134
                           57899****97667444445567888877**********7744440....32345566678999*********************9986 PP

                           SEE..EEEEE CS
                    B3  88 sefelvvkvf 97 
                           ++f  vvk+f
  Sphfalx0201s0027.1.p 135 NRF--VVKFF 142
                           888..99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-1434146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-1435149IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-1236142No hitNo description
PROSITE profilePS5086312.01237145IPR003340B3 DNA binding domain
SMARTSM010191.2E-637145IPR003340B3 DNA binding domain
PfamPF023623.5E-1050142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MMGVGSCRDE EEDEEADERT ALEAAEKQGS VDEDVFFVTS LGKRAIGSPY QLDIPSYFLE  60
YCASRKWELK EKMVLEGDES GMLWKVMMVL RRYKEKRRAN KVRVRASLAR GWKDFALQNK  120
LNTGDSLLFT LVRLNRFVVK FFHPDGSQKK GWLCSNLQQP PAIHAHKLLL PCKNRAAEAA  180
YFKYIEHITS DGHEYVEILD SS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.13e-06B3 family protein