PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0188s0014.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family TCP
Protein Properties Length: 571aa    MW: 58438 Da    PI: 8.473
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0188s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.91.5e-371472542115
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasns 85 
                           a+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl+ +++ai+++tgt++ +as++       +s s +a++ 
  Sphfalx0188s0014.1.p 147 APKRPSTKDRHTKVDGRGRRIRMPATCAARIFQLTRELGHKSDGETIEWLLRHSEAAIIAATGTGTLPASASsiagpLRGSASMQAAAA 235
                           89**************************************************************8888866544433222222222211 PP

                   TCP  86 ssg.......kaaksaakskksqksaasalnlakesr 115
                            +g       +                    +a +sr
  Sphfalx0188s0014.1.p 236 AAGgraalqgN------------------IGFAGSSR 254
                           11122222220..................33333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.4E-32152245IPR005333Transcription factor, TCP
PROSITE profilePS5136927.977153207IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MESGGHGKAK SESQRDSGQG GEASDTGLPP QLIQQYQQAE SRALTGYGSS SRLEQQQQLQ  60
QQHDAGPLAQ AMAAMGGQGM GGAGGSSQMD VTALAMAAGM GREYGAEGQS SRSLVPMGGG  120
TSMSRGQQQE SLGAGTSGEQ VAAKKKAPKR PSTKDRHTKV DGRGRRIRMP ATCAARIFQL  180
TRELGHKSDG ETIEWLLRHS EAAIIAATGT GTLPASASSI AGPLRGSASM QAAAAAAGGR  240
AALQGNIGFA GSSRPPSELE MTSARIQEQM RSRSIEWGMP SAEERGTDVT RGAAMGASTG  300
AHEMMQGFQA HEAAGLVGAP SEIGEGSTDT SRKRPRAGPL TRLKEETEPT RSLQTSPTRQ  360
LSMQQGGAAG GSSSMMQPAM WAVASAVPGV PSGMSGNMPG TVWMLPVSAG QSTSGVMQAG  420
PSEQHIWSFP SSAGQYRMVA PGGTLGPLGG AGGGGGGGNV SSASTMTLMP RSNVQGEMGL  480
ELQGGYMQAS HHMPLGSMQL LQQQAAAVRQ LHPPTGLGLG GPDQGQNLGM LAALQYAYRN  540
LQNPDPQRPM QGSEPHQQQG DSGDDPTGSQ *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386490.12e-94transcription factor TCP22-like
RefseqXP_024386491.12e-94transcription factor TCP22-like
RefseqXP_024386492.12e-94transcription factor TCP22-like
TrEMBLA0A2K1JZT03e-93A0A2K1JZT0_PHYPA; Uncharacterized protein
STRINGPP1S67_183V6.16e-94(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.11e-29TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14