PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0168s0005.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 417aa    MW: 45389.6 Da    PI: 4.8814
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0168s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.9e-1887140356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k++++t +q++ L++ Fe ++++  e++ +LAk+lgL+ rqV vWFqNrRa++k
  Sphfalx0168s0005.1.p  87 KKRRLTFDQVRSLNKNFELENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWK 140
                           5668999**********************************************9 PP
2HD-ZIP_I/II115.23.9e-3787177292
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           kkrrl+ +qv++L+++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlE+dye+L  +y++lk+e e++ +e +eL+++
  Sphfalx0168s0005.1.p  87 KKRRLTFDQVRSLNKNFELENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWKTKQLERDYEVLSLEYNRLKTELEAVVEERQELQAK 175
                           9**************************************************************************************99 PP

           HD-ZIP_I/II  91 lk 92 
                           ++
  Sphfalx0168s0005.1.p 176 VQ 177
                           86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.68E-1975144IPR009057Homeodomain-like
PROSITE profilePS5007116.84482142IPR001356Homeobox domain
SMARTSM003891.5E-1385146IPR001356Homeobox domain
CDDcd000863.20E-1587143No hitNo description
PfamPF000464.1E-1587140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-1989149IPR009057Homeodomain-like
PRINTSPR000318.5E-6113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000318.5E-6122138IPR000047Helix-turn-helix motif
PfamPF021834.1E-12142183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MMQLMRSESS STDTLVAMLA SCGSPMAGGR LQASRSCGSL EDALVGCGQK RGPAFYPAPT  60
FEATSAEELG DDDGGGDDSM SPHVESKKRR LTFDQVRSLN KNFELENKLE PERKMQLAKE  120
LGLQPRQVAV WFQNRRARWK TKQLERDYEV LSLEYNRLKT ELEAVVEERQ ELQAKVQWLT  180
GKVHPDQAEL SAGCREPAAG DVSGACKVME STAPAALQHP HPSSTTNAEM TQMNLLPHES  240
KAEQQARSFP TTREGLPSST TARNNRKLAD GSPSSVSCTS SEILDADSPR TIESGFSLTQ  300
AQEYSKTVDA ASCTPQLICA VDTIRAAADH PAPTTARDVI MDNLTEEFCG GSRVFSPRTA  360
TAAYNPRATA VKLEPELLMG TSASVVSFQA DHDSCNYLLS QVDEHAGALE PWWDWA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-37homeobox protein 16