PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0155s0007.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 675aa    MW: 74763.4 Da    PI: 5.8888
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0155s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.34.7e-14147232281
              trihelix   2 WtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                           W  +e l+L  a++e+  r ++g+       ++ +W+++ ++++++ ++rs++qC++kwe+++ ++kk+k+ e++  s+++s +++
  Sphfalx0155s0007.1.p 147 WNVSEMLVLQSAKKEDVVRAGKGAprdkhrTAQEKWQSIEDYCWAHFVQRSAQQCQDKWESMSAEFKKVKDCESGILSGQRSYWQM 232
                           888899999999998888888763444444999*****************************************998888877754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.446139209IPR017877Myb-like domain
PfamPF138375.7E-11146232No hitNo description
SuperFamilySSF534741.18E-68342649IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18207.3E-25356647IPR029058Alpha/Beta hydrolase fold
PfamPF005611.3E-11401522IPR000073Alpha/beta hydrolase fold-1
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MRKRGMEIGI HSLLQRDHDT GQQTLEYELR AGKELEIDLR MEQGGAEIGG GASGGGGGGA  60
VVSGIVGIED GDLEAQELVA LRQDSYPGAE ARDSGGTEEE AITMDDDAPS TPTGLTVGGV  120
DPARGSAAAG GGPEMDRKDR VYKKGPWNVS EMLVLQSAKK EDVVRAGKGA PRDKHRTAQE  180
KWQSIEDYCW AHFVQRSAQQ CQDKWESMSA EFKKVKDCES GILSGQRSYW QMSMDERKTF  240
RMPPNFQKEV YQGLQEWYDK NRAVEPGTIS LSNMTKVEDS KVQSPVAIGS SSPSGGAVSS  300
RKRPVERTVT RVPRKIVRSD SMSVPTHLDP RALSQGEREA FDMFDLGDFV LRKGATLRGA  360
KVAYKVWGTL NEERSNAILY PSWFSGRHWE NDWLIGPGMG LDPCKYFIIV PNMLGNGLST  420
SPSNCPAPYN KARFPKVTLE DNVRAQFKLV TEKFGIHQLK LVIGWSMAAS QAFQWAASFP  480
DMVERILPFC GSARISPHHI VFLEGVKAAL TADSSFQDGW YEKTPSKGLR AVARVYAGWG  540
FSQAFYWNEV WREMGYSSLE DFLIGFWEGF FLDRRDPNNL LNMLWTWQNS NIGLTDGCDG  600
SVEKALGLIR AKAIVMPAAQ DLYFPVADEE YEVKFMQNAE LRVIPGVWGQ FAGAGLNSHD  660
TKFIDKAVHD LLAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d6o_A2e-6834167215347Homoserine O-acetyltransferase
5d6o_B2e-6834167215347Homoserine O-acetyltransferase
5d6o_C2e-6834167215347Homoserine O-acetyltransferase
5d6o_D2e-6834167215347Homoserine O-acetyltransferase
5d7b_A2e-6834167215347Homoserine O-acetyltransferase
5d7b_B2e-6834167215347Homoserine O-acetyltransferase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383860.10.0uncharacterized protein LOC112286322
TrEMBLA0A2K1K3M60.0A0A2K1K3M6_PHYPA; Uncharacterized protein
STRINGPP1S89_235V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.15e-19Trihelix family protein