PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0139s0044.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 944aa    MW: 102610 Da    PI: 7.0199
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0139s0044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.5e-07850899147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                           r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Sphfalx0139s0044.1.p 850 RRPFSVAEVEALVHAVEKLGTGRWRDVKLRAFdqaKHRTYVDLKDKWKTL 899
                           6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.959845904IPR017930Myb domain
SMARTSM007171.2E-6849902IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-10850900IPR009057Homeodomain-like
CDDcd116602.16E-17851901No hitNo description
SuperFamilySSF466897.08E-15851931IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 944 aa     Download sequence    Send to blast
MEAQGRRFSG GFPGYDGPAP PRAMRSSRGR GEATRRQSVV VPHKGRFELL ATVAGRILQD  60
TGVNEGQDKL KANERESLKE NSPSEIDSQV SSVGSVTNHI FTDKRQSATV LCVAPTVVVP  120
GQLVMNEEEL QVAGAKKNEG VVGQGENSFE NFRSEAAVCS LSQEEQSKAV EKVTLVDQDS  180
VAPVNIVSST PADQELLPPP SYSDLSTAKF DPTPASPSIE IKEITSIESL GRCTEMQQYQ  240
ENFEIIETVS EEIMEDKKQA TLGSVGIIGL GNMEFELPLM TQEKPMEKNV ISVECCKENR  300
GCSEAIGEVM AMLDGPVTVM NEASSSIPEF QSSESGDFMK LASPIYLQED KDEENVSMEM  360
EDKGIVVNEK TPPSVATSGC SKFVSSGLAE GHNSRPMLKR VMCKRDVKFS RTKKMNSSQH  420
LLQETMTKKL KNSYSKASDA QKVAKPVKCT HLSKTSIKRD HTDMESTDSG SSQEAASEKE  480
TLYGGIAGLT WQRRTRRLSS KRKKMVDGRC NPEDLHWNNV NLMEMGYEYV DGEPPAAAAK  540
LRSAKAASVA SSPTGKRSSK LSSKKSLEPH SPNTVTLSIK SFTVPELFVD LPESASILNL  600
KRAVMEAAMN LLGGGLRVRV LLQGKKVPDE GITLLQMGIS HNTKPESLGF MLEPSPLPTS  660
SSATAEDPLL VLSHAASPPL PRYPVFGAHG LSGSVEGHGR CIGKGQPTRA SEMVVDADPT  720
YGMPPLPADE HQSINKKQAA DEMLKGGNGI RSRMHLHDRM PVSAHSMRVP VPGALAAIHA  780
QMDTSCQAKN ELDPTSTVTS NISQESFEGE SGAIVLHPSM GTGDNLPGLA LVPVRQKMSC  840
ALEVGKRRMR RPFSVAEVEA LVHAVEKLGT GRWRDVKLRA FDQAKHRTYV DLKDKWKTLV  900
HTARIAPHQR RGEPVPQELL ERVIQAHSYW TAQAAKQQAE LDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-488339401107Telomere binding protein TBP1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1493503RTRRLSSKRKK
2845850KRRMRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.15e-41TRF-like 2