PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0126s0035.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 481aa    MW: 49597.9 Da    PI: 6.6114
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0126s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.7e-12277322555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h+++Er RR+ri +++  L+el+P++      K +Ka++L + ++Y+k Lq
  Sphfalx0126s0035.1.p 277 HSIAERLRRERIAERMKALQELVPNS-----NKTDKASMLDEIIDYLKFLQ 322
                           99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-17270331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-13270326No hitNo description
PROSITE profilePS5088817.504272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-16274331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-9277322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-14278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MERVGTGGAV MMAGGGVDAN NSNNSVNNGS SSSSMGAAAA QKLFTMSLMP TTRLLNNGGA  60
LGALGGQHVR EERNESSGLE SGHYSAAEEA LIAARLHQQQ QQQGKELRGE ACAMEGVTLA  120
TQEPGSGSPG LQQMNAAAGP RGSSSLVRSV SMGSSGSEDS GGQPGQGGDH SSSPPTAPTW  180
QQPYVGVVPP LPTNLAHAKA ENTLGRGGEF DNTQTLGKRF REDEEGPLCE NHSGITGSGH  240
TSFASGQGFG GSSQQRLPAV GIRPRVRARR GQATDPHSIA ERLRRERIAE RMKALQELVP  300
NSNKTDKASM LDEIIDYLKF LQLQVKILSM SRLGGAGAVA STASDPTAEG SNNVAPTISR  360
TSGVPSPVQD GLALTERQVT QLMEDDMGSA MQYLQSKGLC LMPIALATAI STTNSRGATA  420
GVGDRQRTTV AASNGGLVTD GLVSEQSSKD NNRDVESAHA TTSMPINKAP KGEGKPSDGP  480
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281286RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024394844.11e-106transcription factor bHLH85-like isoform X2
TrEMBLA0A2K1JI031e-104A0A2K1JI03_PHYPA; Uncharacterized protein
STRINGPP1S209_22V6.21e-105(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.14e-54LJRHL1-like 1