PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0124s0044.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 515aa    MW: 55396.8 Da    PI: 6.8175
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0124s0044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.42e-30237295259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D ++WrKYGqK++kgs+fpr+YYrC+s+ gC ++k+vers++dp+++++ Y+ eHnh+
  Sphfalx0124s0044.1.p 237 ADLWAWRKYGQKPIKGSPFPRGYYRCSSNkGCLARKQVERSRNDPSMLIVSYTAEHNHP 295
                           699*************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-30230297IPR003657WRKY domain
SuperFamilySSF1182909.15E-26234297IPR003657WRKY domain
SMARTSM007741.1E-36236296IPR003657WRKY domain
PROSITE profilePS5081131.777238297IPR003657WRKY domain
PfamPF031065.2E-25238295IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MEESHHELGL DFQDVCNTSP DSASTYSCLR RQSSSQLMGS SAAAGTETKP VEEEDTSCSA  60
CHELLVTRSS STARPAKMSS THELLQSSRP IPNPARPPRL GLRSVRNPGS SSSSSSSARM  120
QAVVKTEEYS SSSNGSQNIS TTTAAGAAAT IPSQHPLLTR RRNSSSSVTR LESQLPRRSS  180
SGTSPIHGAT AAVHGTDEDQ CRRSTKQQQQ KKRTVLVSLV GNNGGGRSSN EAHVPAADLW  240
AWRKYGQKPI KGSPFPRGYY RCSSNKGCLA RKQVERSRND PSMLIVSYTA EHNHPQPSHR  300
NLLAGCTRVT SSGKEAKASA QSCSSTTLEK RRPSDTATEL KSDSKEPAAV QCHDHSNHEL  360
RGQQWEGFTN GVDHESQPDD IVSIHNDKLF AAIPSSYSTS CTPYGIESSS QELHETPVVN  420
VVSLGKLQQI AIVQSYVESH DHLLLESLSG SSVKDEDFFA ELEELPDSSS VTSFACGSFL  480
EDPSDEGVVG ITVVDPYNLF SWSSISSLES KAAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-212342981180Disease resistance protein RRS1
5w3x_D1e-212342981180Disease resistance protein RRS1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.18e-40WRKY family protein