PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0119s0043.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

MIKC_MADS

Protein Properties

Length: 284aa MW: 31032.8 Da PI: 7.7413

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0119s0043.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.5	7.4e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvtfskRr g+lKKA+EL vLCdaeva+iifsstgkl+e++s Sphfalx0119s0043.1.p 9 KKIENPTSRQVTFSKRRGGLLKKAHELAVLCDAEVALIIFSSTGKLFEFAS 59 68***********************************************86 PP
2	K-box	84.5	2.2e-28	83	172	10	99
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ + + +e+ kL++++e Lq++qRh+lGedL++L++ +L qLeqqL+ + +++ ++Kn+lll++ie+l++ke++lq+en +L +kl Sphfalx0119s0043.1.p 83 NNNSSDLMGHEVLKLRQQLERLQTTQRHMLGEDLSQLTVPDLLQLEQQLDMGSSRVQERKNQLLLKEIEDLRRKEHDLQQENAELLHKL 171 445567799******************************************************************************98 PP K-box 99 e 99 + Sphfalx0119s0043.1.p 172 A 172 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.6E-42	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.011	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.02E-47	2	79	No hit	No description
SuperFamily	SSF55455	8.5E-34	2	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-30	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.3E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-30	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-30	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	5.1E-26	82	171	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	15.998	87	177	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009553	Biological Process	embryo sac development
GO:0009911	Biological Process	positive regulation of flower development
GO:0010094	Biological Process	specification of carpel identity
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048455	Biological Process	stamen formation
GO:0048459	Biological Process	floral whorl structural organization
GO:0048509	Biological Process	regulation of meristem development
GO:0048833	Biological Process	specification of floral organ number
GO:0080060	Biological Process	integument development
GO:0080112	Biological Process	seed growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MGRGKIEIKK IENPTSRQVT FSKRRGGLLK KAHELAVLCD AEVALIIFSS TGKLFEFASS 60 GSMQEILDRY SKCPDGAQTG TSNNNSSDLM GHEVLKLRQQ LERLQTTQRH MLGEDLSQLT 120 VPDLLQLEQQ LDMGSSRVQE RKNQLLLKEI EDLRRKEHDL QQENAELLHK LADAKGIAEA 180 VVRGGAAAGA GPSSSVTGQP NIPARDPPPG GGSTQTAPPP PPTVYPSHPN LRDPQTSQTS 240 LHLGLFSESF PPSASRRPSQ QNPTDPEGET SLRWDHPQFR SQK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	8e-23	1	71	1	70	MEF2C
5f28_B	8e-23	1	71	1	70	MEF2C
5f28_C	8e-23	1	71	1	70	MEF2C
5f28_D	8e-23	1	71	1	70	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00315	DAP	Transfer from AT2G45650	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024394528.1	1e-127	MADS-box transcription factor 5-like
Swissprot	Q9XGJ4	9e-60	GGM13_GNEGN; MADS-box protein GGM13
TrEMBL	A0A2K1JHV3	1e-126	A0A2K1JHV3_PHYPA; Uncharacterized protein
STRING	PP1S209_130V6.2	1e-127	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.1	2e-46	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0119s0043.1.p

Publications ? help Back to Top
Winter KU, et al. MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants. Proc. Natl. Acad. Sci. U.S.A., 1999. 96(13): p. 7342-7 [PMID:10377416]