PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0118s0004.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C3H | ||||||||
Protein Properties | Length: 482aa MW: 51633.7 Da PI: 7.1049 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22 | 2.8e-07 | 146 | 168 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C+f+++ G C++Gd C F H Sphfalx0118s0004.2.p 146 KGKPCNFWLK-GNCNRGDDCMFLH 168 5689******.************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0097 | 33 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.934 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-7 | 34 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-5 | 36 | 57 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.01 | 38 | 58 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 144 | 169 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.0E-7 | 144 | 170 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.394 | 144 | 171 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 145 | 169 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 148 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00320 | 0.0018 | 175 | 214 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 1.05E-51 | 175 | 472 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 2.4E-11 | 177 | 261 | IPR015943 | WD40/YVTN repeat-like-containing domain |
Pfam | PF00400 | 0.015 | 179 | 214 | IPR001680 | WD40 repeat |
CDD | cd00200 | 7.90E-39 | 181 | 471 | No hit | No description |
PROSITE profile | PS50294 | 24.363 | 182 | 385 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 13.483 | 182 | 223 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 201 | 215 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 1.8E-7 | 201 | 215 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 0.0038 | 254 | 292 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.16 | 258 | 291 | IPR001680 | WD40 repeat |
Gene3D | G3DSA:2.130.10.10 | 2.3E-40 | 262 | 471 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 1.0E-6 | 299 | 336 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 6.6E-4 | 303 | 336 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 14.285 | 306 | 345 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 1.8E-7 | 323 | 337 | IPR020472 | G-protein beta WD-40 repeat |
PROSITE pattern | PS00678 | 0 | 323 | 337 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 1.1E-5 | 339 | 376 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 9.3E-5 | 340 | 375 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 8.904 | 346 | 385 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 1.8E-7 | 363 | 377 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 200 | 380 | 430 | IPR001680 | WD40 repeat |
SMART | SM00320 | 1.8 | 433 | 470 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MMAGMEVDDG PTRVGGKRNY PRSGNPGGAG ARSHHPQICR YWQEGRCLKG DDCQWLHPGN 60 PGTTGRGTFL GNGRRASNVI DNRSDNRGGW GTTGEGGFSS GSSSQGRSRN VSARWGRPRN 120 VVGRPSQRDR GYTDGSGGGH TQRSTKGKPC NFWLKGNCNR GDDCMFLHAH TTAPDIQMMT 180 QLIGHEKAIR AIEMPQGASQ LYTGSQDESV RVWDCTTGQC TNVVQMGGDV GALLSAPGWL 240 FIGLPNEVQT WNVQTSAQQS LSGPKGQVHA LAVSEDGLLF AGTQDGTILE WKFNALTHSF 300 EPAASLSGHT GPVITLLFIG NRLYTGSMDK TIRIWDIASG QCIQTLEGHS DVVMDLLCWE 360 QFLLSCSLDG TIRVWAANAA GQLDTTFTHP EDEGQAEPCN GALKMCGCND GAGKPVLLVS 420 YNDNIVRLYD LPTFSERGQL FSREEVRALH VGPGGLVFSG DSCGTVKVWR WTGVQLAAGG 480 G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 2e-22 | 177 | 473 | 2 | 324 | Tako8 |
6g6n_A | 2e-22 | 177 | 473 | 2 | 324 | Tako8 |
6g6n_B | 2e-22 | 177 | 473 | 2 | 324 | Tako8 |
6g6n_C | 2e-22 | 177 | 473 | 2 | 324 | Tako8 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024391880.1 | 0.0 | zinc finger CCCH domain-containing protein 17-like | ||||
TrEMBL | A0A2K1JM60 | 0.0 | A0A2K1JM60_PHYPA; Uncharacterized protein | ||||
STRING | PP1S374_36V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51980.1 | 1e-138 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0118s0004.2.p |