PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0118s0004.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 482aa    MW: 51633.7 Da    PI: 7.1049
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0118s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-07146168225
                           -S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                           k ++C+f+++ G C++Gd C F H
  Sphfalx0118s0004.1.p 146 KGKPCNFWLK-GNCNRGDDCMFLH 168
                           5689******.************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00973359IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9343360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-73458IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-53657IPR000571Zinc finger, CCCH-type
PfamPF146080.013858No hitNo description
Gene3DG3DSA:4.10.1000.101.6E-5144169IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-7144170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.394144171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6145169IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4148168IPR000571Zinc finger, CCCH-type
SMARTSM003200.0018175214IPR001680WD40 repeat
SuperFamilySSF509781.05E-51175472IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.4E-11177261IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004000.015179214IPR001680WD40 repeat
CDDcd002007.90E-39181471No hitNo description
PROSITE profilePS5029424.363182385IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.483182223IPR001680WD40 repeat
PROSITE patternPS006780201215IPR019775WD40 repeat, conserved site
PRINTSPR003201.8E-7201215IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0038254292IPR001680WD40 repeat
PfamPF004000.16258291IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.3E-40262471IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.0E-6299336IPR001680WD40 repeat
PfamPF004006.6E-4303336IPR001680WD40 repeat
PROSITE profilePS5008214.285306345IPR001680WD40 repeat
PRINTSPR003201.8E-7323337IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780323337IPR019775WD40 repeat, conserved site
SMARTSM003201.1E-5339376IPR001680WD40 repeat
PfamPF004009.3E-5340375IPR001680WD40 repeat
PROSITE profilePS500828.904346385IPR001680WD40 repeat
PRINTSPR003201.8E-7363377IPR020472G-protein beta WD-40 repeat
SMARTSM00320200380430IPR001680WD40 repeat
SMARTSM003201.8433470IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MMAGMEVDDG PTRVGGKRNY PRSGNPGGAG ARSHHPQICR YWQEGRCLKG DDCQWLHPGN  60
PGTTGRGTFL GNGRRASNVI DNRSDNRGGW GTTGEGGFSS GSSSQGRSRN VSARWGRPRN  120
VVGRPSQRDR GYTDGSGGGH TQRSTKGKPC NFWLKGNCNR GDDCMFLHAH TTAPDIQMMT  180
QLIGHEKAIR AIEMPQGASQ LYTGSQDESV RVWDCTTGQC TNVVQMGGDV GALLSAPGWL  240
FIGLPNEVQT WNVQTSAQQS LSGPKGQVHA LAVSEDGLLF AGTQDGTILE WKFNALTHSF  300
EPAASLSGHT GPVITLLFIG NRLYTGSMDK TIRIWDIASG QCIQTLEGHS DVVMDLLCWE  360
QFLLSCSLDG TIRVWAANAA GQLDTTFTHP EDEGQAEPCN GALKMCGCND GAGKPVLLVS  420
YNDNIVRLYD LPTFSERGQL FSREEVRALH VGPGGLVFSG DSCGTVKVWR WTGVQLAAGG  480
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-221774732324Tako8
6g6n_A2e-221774732324Tako8
6g6n_B2e-221774732324Tako8
6g6n_C2e-221774732324Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391880.10.0zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A2K1JM600.0A0A2K1JM60_PHYPA; Uncharacterized protein
STRINGPP1S374_36V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-138C3H family protein