PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0111s0046.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 538aa    MW: 58231 Da    PI: 4.6415
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0111s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.8e-141461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT+ Ed +l  ++k +G g+W+t ++  g+ R++k+c++rw +yl
  Sphfalx0111s0046.1.p 14 RGPWTEAEDAILSAYIKAHGEGSWRTLPKAAGLARCGKSCRLRWINYL 61
                          89********************************************97 PP
2Myb_DNA-binding48.42.2e-1567112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg+ + +Ed+l++ ++++lG++ W++Ia +++ gRt++++k++w+++l
  Sphfalx0111s0046.1.p  67 RGKISSDEDDLIITLHALLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 112
                           7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.494961IPR017930Myb domain
SuperFamilySSF466891.45E-2712108IPR009057Homeodomain-like
SMARTSM007171.0E-101363IPR001005SANT/Myb domain
PfamPF002492.3E-121461IPR001005SANT/Myb domain
CDDcd001671.13E-81661No hitNo description
PROSITE profilePS5129426.03362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-2565117IPR009057Homeodomain-like
SMARTSM007172.5E-1566114IPR001005SANT/Myb domain
PfamPF002497.0E-1467112IPR001005SANT/Myb domain
CDDcd001676.86E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MGRAPCCDKE GLNRGPWTEA EDAILSAYIK AHGEGSWRTL PKAAGLARCG KSCRLRWINY  60
LRPDIKRGKI SSDEDDLIIT LHALLGNRWS LIAGRIPGRT DNEIKNYWNT HLKRKLKSMG  120
LDPSARHKLP SFPFSSSGST KFAQLENRSC DEAKENCNEQ ETTNSLNHIS SSPSGNSRQF  180
QEIEDSNQPV STSKIRSPAP INTVASSFTE NNQFQSLGNS GNFSSEADSD DSLNQMIPDL  240
RHEAAAPPRS TRELTVEVVK AGASGQAAQL YPSSPDSVLS TYNLGSLQQN SSVSQAPRDY  300
NSSSQTNLLQ ARASKPPPTP LGPDNSIPQV IADSLSNCAD MMQVEPANHV PVLELGSVSK  360
CNTPSTCSSD FSTEGNNIST SAENSSSSGC DSTIELVHSE FTSGLCRNGL MGYKDSVTGG  420
GNDDDDDRST SEEFVALLDS AADHQDPYYT LMANLSSLKT INTDQISSMS SSCSYGYSLP  480
LENLFSPFPE YMQDSILQHE MQPLLLGDQA FSLQPLHSSS AASFLSTDDN FWESCVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27121185110B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKRKLKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.12e-68myb domain protein 7