PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0104s0079.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 512aa    MW: 52807.2 Da    PI: 5.2259
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0104s0079.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.1e-09149174127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           ykt+lC++f+  G C+y  +C+FaHg+
  Sphfalx0104s0079.1.p 149 YKTKLCSRFRS-GNCPYNTNCNFAHGM 174
                           9********99.*************95 PP
2zf-CCCH29.11.7e-09228252226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           kt++C+ ++  G C+yG++C+F H+
  Sphfalx0104s0079.1.p 228 KTRPCKKYFGEGNCPYGEKCNFLHD 252
                           8***********************7 PP
3zf-CCCH43.45.7e-14313338126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt+lC+ +  tG+C++Gd+C+FaHg
  Sphfalx0104s0079.1.p 313 WKTRLCNKWETTGQCPFGDKCHFAHG 338
                           8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.9E-9147179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-15148181IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6148174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.291148175IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-7149174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-7225254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-10226254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.394226254IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-4228253IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-7228252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-18308343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-10310344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.164312340IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-9312339IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-11313338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MDTTAAAELG MLADAGGVDG VGFWDSGDVD PSSWGGEEEE EEDDAEEDFL WERAAAVVAS  60
QAAAQGPPGR QQRQSSSSAG MEPPSKKRSK PAPPDEASPG AGGRGSGSNS GKGNSQHVGG  120
GQGFGPAGGA VVVGAGAVGR GRGTGSIFYK TKLCSRFRSG NCPYNTNCNF AHGMEELRKP  180
PPGWEEFVAS QELPPAMPAS QSPSHGGSGG GAAGGGGGST DSQVRFHKTR PCKKYFGEGN  240
CPYGEKCNFL HDEQSAPRAV REARETAAPL LSTPKTESSS LSAEGPAKDA LASNSAATAS  300
AAAGSITPRP PNWKTRLCNK WETTGQCPFG DKCHFAHGSD ELQMYGGGPL DPNAPAPTIS  360
DSGGSPNKSP SETGTDSSIL YNDAGPRQRQ LNAGASQQNS SRGFSGGGLK AFTNWKGPTD  420
ISTIYGDWID EEEEWEHDSR GDQESLGAES NAKSVEQLPL PHQQQNVAFF RGGNGRHISR  480
QSNNIQTHGF SSSAKNGGAG HVTGLLGVEP G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.17e-54C3H family protein