PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0102s0036.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 460aa    MW: 51497.4 Da    PI: 6.578
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0102s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.8e-09397446147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                           +++W++eE e l++ v ++G+g+Wk+I +        Rt+ ++k++w+++
  Sphfalx0102s0036.1.p 397 KNKWSEEEVETLKREVWKYGKGRWKLILQNNCnifRDRTEVNLKDKWRNL 446
                           689*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.929392451IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-10395447IPR009057Homeodomain-like
SMARTSM007174.1E-4396449IPR001005SANT/Myb domain
PfamPF002499.7E-7397446IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-12398454IPR009057Homeodomain-like
CDDcd116609.01E-15399448No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MARERSSDVS AAYRKLMKEE TAGERLVKIW IWEYVLKFSS DEGLIIELLD SLAFPDDVSR  60
LKQMFLLKEL SGQIVRGLVL QKALDTLEAL LEVVSNVAAK EAPEPPGPLL EEKGRRGRKR  120
LRAPGGGTRI LRTGSDGCGT TVGGGHGGDG QQERDWSDLV ELIKEVRKEL QDETDVESSV  180
SRKRKYKEVE NKLKTFTETA WTELGPMFLE KVEVAVMNGL YKGATGVQTE EVVLSQPTGA  240
GKPVEELADK EAKKKVVDKE VIQQKTRDLE RARQGLLASV AQLEKLVEDP LPAALERLNE  300
NGADDDSVQV PASTSGRGLQ SAPAPSTRRK FLDPHPSAHS QRWNDDEIDD NPPTNSASVT  360
RQVQLTPLSS PQQMSPLVPM NRLKPAPSRG GMAYRQKNKW SEEEVETLKR EVWKYGKGRW  420
KLILQNNCNI FRDRTEVNLK DKWRNLERYE GIHEDKAVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116122GRKRLRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-09MYB_related family protein