PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0101s0028.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MIKC_MADS
Protein Properties Length: 297aa    MW: 32834.8 Da    PI: 6.7542
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0101s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885.2e-283888151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ien + rqvtfskRr g+lKKA+EL vLCdaeva+i+fsstgkl+e++s
  Sphfalx0101s0028.1.p 38 KKIENATSRQVTFSKRRGGLLKKAHELAVLCDAEVALIVFSSTGKLFEFAS 88
                          68***********************************************86 PP
2K-box89.27.7e-30107196998
                 K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                           +  +++e + +e+ +L+++++ Lq++qRh+lGe+L+ L++ +L  LeqqL+ +++++R++Kn+llle+i++l++ke++lq+ n++Lrkk
  Sphfalx0101s0028.1.p 107 QPGNESEFMGREVVRLRQQLDHLQNSQRHMLGENLSVLTVPDLLLLEQQLDMGVSRVRARKNQLLLEEIDDLRRKEHDLQQVNEDLRKK 195
                           6678999********************************************************************************99 PP

                 K-box  98 l 98 
                            
  Sphfalx0101s0028.1.p 196 A 196
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.0533090IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-423089IPR002100Transcription factor, MADS-box
CDDcd002659.51E-4631107No hitNo description
SuperFamilySSF554557.19E-3331115IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-303252IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003286IPR002100Transcription factor, MADS-box
PfamPF003197.8E-263986IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-305267IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-306788IPR002100Transcription factor, MADS-box
PfamPF014861.6E-27110195IPR002487Transcription factor, K-box
PROSITE profilePS5129716.033112202IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MVCRLLRREG EETTDPTVGG EEEGGGGGHM GRGKIEIKKI ENATSRQVTF SKRRGGLLKK  60
AHELAVLCDA EVALIVFSST GKLFEFASSG SMQAILERYS KSSDGLQPGN ESEFMGREVV  120
RLRQQLDHLQ NSQRHMLGEN LSVLTVPDLL LLEQQLDMGV SRVRARKNQL LLEEIDDLRR  180
KEHDLQQVNE DLRKKASTLH QEHELADTSA MVEPVARAIP SVGQGQITRL SSCEPGGSSQ  240
TPTVYPTHPN LQDPQTSQTS LHLGLFSEAF PQRSSRQLSH HSSAEPEGNH HCQHQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-2030104174MEF2C
5f28_B9e-2030104174MEF2C
5f28_C9e-2030104174MEF2C
5f28_D9e-2030104174MEF2C
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373432.11e-112MADS-box protein GGM13-like isoform X2
TrEMBLA0A2K1LAA71e-110A0A2K1LAA7_PHYPA; Uncharacterized protein
STRINGPP1S26_90V6.11e-106(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-44AGAMOUS-like 21