PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0100s0056.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | HB-PHD | ||||||||
Protein Properties | Length: 663aa MW: 72908.5 Da PI: 5.2926 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.3 | 1.7e-10 | 491 | 534 | 10 | 53 |
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 + +e+L ++ +k++ p+++++eeL+++lgL+ +qV WF+N+R Sphfalx0100s0056.1.p 491 SAVEALRQVLAKDQLPTKSRKEELSEQLGLSYCQVHSWFKNQRH 534 56889999999*******************************96 PP | |||||||
2 | PHD | 41.8 | 2.5e-14 | 167 | 222 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C++ + +++++lCdg C++ fH++Cl+++l +e++p g wlC+ C++k Sphfalx0100s0056.1.p 167 FCAKCKSqeAVPDNDIILCDGaCNRGFHQYCLNPPLATEDIPPGdeGWLCPVCECK 222 699***966666********66********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 2.66E-14 | 159 | 226 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.4E-12 | 162 | 222 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 11.003 | 165 | 222 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 4.99E-33 | 167 | 219 | No hit | No description |
Pfam | PF00628 | 1.2E-11 | 167 | 222 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 6.4E-10 | 167 | 220 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 168 | 219 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 2.0E-12 | 464 | 535 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.232 | 479 | 539 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-12 | 481 | 543 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.36E-11 | 482 | 539 | No hit | No description |
SuperFamily | SSF46689 | 1.2E-11 | 482 | 542 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.7E-8 | 491 | 534 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 663 aa Download sequence Send to blast |
MADATAAAPL KTTLRSKNPK LSPLSLPQAD VGGGSGGMTM IQANNNAPES HKTGGRRQRR 60 RRRRRQKTKE LQPLDNLTRI KRRVKYLLIK MRVEQNLIDA YSGEGWKGQS REKIRPEQEL 120 QRAESQVLHS KLAIREAIHE LDKLGFEGSL KDSAFDAEGC IYHEEIFCAK CKSQEAVPDN 180 DIILCDGACN RGFHQYCLNP PLATEDIPPG DEGWLCPVCE CKMECIEVIN AYMSTTFEVE 240 NSWEEFFAEA AAIAAGNGPG NGGGDWPSTD SEDDDYDPEG LEERPNSESE KEGKEEDSSS 300 SSDSESESGQ KVGFSNSSSD DASGKFKTPS IGKSNWDHTN SVQADSVDAG RSLDSSADEG 360 SESPLVDRGR GSRAVSDDEG PMIVAGKRQH KAVDYKKLHD EMFGNTELNE DFVSEDEDWG 420 PKRRRRRTNA DTSGKPGVGR SRALASNIST SKEGPSHENQ PDVQKAPTGD GAAIVSRQDA 480 ERKIWRRLPD SAVEALRQVL AKDQLPTKSR KEELSEQLGL SYCQVHSWFK NQRHQALRKG 540 LVTPRSQVSK TANAMIEAQV STSDGPVFNE AHTAGNEQKP RTKNTLSEKL DEVQSRLLEL 600 KRTLEDFARS MAVEDVKDVP GEGVPKFEDR SVEPSANGKR VVYVPVAEVR ERPSAATSTG 660 AY* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 55 | 60 | RRQRRR |
2 | 55 | 62 | RRQRRRRR |
3 | 55 | 63 | RRQRRRRRR |
4 | 56 | 63 | RQRRRRRR |
5 | 56 | 64 | RQRRRRRRR |
6 | 57 | 63 | QRRRRRR |
7 | 58 | 64 | RRRRRRR |
8 | 421 | 426 | KRRRRR |
9 | 422 | 427 | RRRRRT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372275.1 | 0.0 | pathogenesis-related homeodomain protein-like | ||||
TrEMBL | A0A2K1KWH3 | 0.0 | A0A2K1KWH3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S55_45V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29940.2 | 9e-72 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0100s0056.1.p |