PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0100s0018.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 650aa    MW: 72342.8 Da    PI: 4.8734
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0100s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.3e-20334383255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdps+     r +lg++ taeeAa a+++a+++++g
  Sphfalx0100s0018.1.p 334 KYRGVRQRP-WGKWAAEIRDPSK---GVRLWLGTYETAEEAAHAYDKAAREIRG 383
                           8********.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.1E-32333391IPR001471AP2/ERF domain
SMARTSM003808.5E-39334397IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22334391IPR016177DNA-binding domain
PfamPF008473.9E-13334383IPR001471AP2/ERF domain
CDDcd000182.27E-33334391No hitNo description
PROSITE profilePS5103224.039334391IPR001471AP2/ERF domain
PRINTSPR003671.7E-10335346IPR001471AP2/ERF domain
PRINTSPR003671.7E-10357373IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MYWDHSEKKR LTRSTAQETK NSRFAEDSCL HCSTGYLDNI ARSSERRACK TKADVRTVRK  60
KQTTNPASHI TALLHLSDRR NVVAIRERER ERERERENMP GPQSLPPRSL TICRTTLPKI  120
SKKVVVKREL LMDDSDEEDE EWDSRTRIRP RKVRVICTDP DATDSSSEEE GSSSFRHNHF  180
TPGGLQQRRN VQEIGFRADL YSPSSESDSE DEEGGAAEVP SYHSVFTATA MKCGFNCARS  240
STFLEKEPSK FGTTSAGSWQ MKKKKKAEEK KVAKKSSKKE PASQKSSIVK SSTTTTVVKK  300
MGTGDFLSSQ TGSRAGSIEF QKTGEEGSGG KPRKYRGVRQ RPWGKWAAEI RDPSKGVRLW  360
LGTYETAEEA AHAYDKAARE IRGSEARTNF QGVVVPLAGA GPLLQVQSKA ENINAEDECQ  420
RKLTDSPEKE MASKAMIRSD HIADSADEDI ATEMMEQCSD IYDESLDHPL EEQFNDFPHP  480
ADDECGFFVS SSSPSSVIDG CMSNFSAEHS LCSFPETTSE HSVCEQFLSG EDDSIEGCCL  540
SESTVCLPQE RIQDCAAEQQ QAREQHGSSA DSKLEVGEEE LCDNAAMHLP QAYFEDVDFI  600
LDTLSCADGG QDEQMIDFSA ISFDLLDDDG VDITDLVFDK TNSWFGRHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21333390159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18595RERERERERER
2261270KKKKKAEEKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-18ERF family protein